Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq150367 196 6e-45 seq118491 118 1e-21 seq93348 98.7 1e-15 seq195337 96.9 5e-15 >seq150367 Length=3699 Score = 196 bits (216), Expect = 6e-45 Identities = 563/860 (65%), Gaps = 36/860 (4%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| || ||||| || || || ||||| || || | ||| || Sbjct 1548 GACATCACTCCCATCTTCTGGTACTCTCCTGGCTTCTTCTCGAAGAAGTTGGCCTTCCCC 1607 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 |||| || || || |||||||| ||||| |||||| || || || || | | Sbjct 1608 TCCAGGGAGATGTTCTCCATGAAGTCAAAAGGATTG------TTGTAGATCTTACTGCAC 1661 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 | | |||| | | | |||| | || | ||||| |||| ||| ||| Sbjct 1662 TCGAGTTCACCCAATAGCCGGCCTGCTACAAACACGATATACTGTTTCCTCAGGTCATTT 1721 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || || || | ||||||||| | || || || || || |||| || Sbjct 1722 TTCATACCAATCAGCTTCAGGGGAAGAGCCTCCGTCAGGAACTCCTGAGCAATCTTCACG 1781 Query 41999 GCGTCTGTT-ATAATAGATCTT--ACTGTTTCTTCACTCGG-TGGATACAATAAATGTTT 42054 || | ||| || || || | | | || ||||| || | | || | |||||| Sbjct 1782 GCAT-TGTCGATGATC--TCGTGGATGGGCTCCTCACTAGGCTTGTTA-ACCAAATGTCC 1837 Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 ||||||| ||| || || || ||||| || |||||||| ||||| || | ||| ||||| Sbjct 1838 GAACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGTTCATTGGA 1897 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 ||||| || |||| ||||| || |||||| ||||||| ||| ||||| || || Sbjct 1898 GAACGTCAGCCCGG-CATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCAAAGGAGCC 1956 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 || || ||||| |||| || || |||||||| | || ||| | Sbjct 1957 CGAGAAAAAGATGTCTTCCACCGCATTAAAGGCAACCACGCT-------------GCATT 2003 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 ||| ||||| | ||||||| || |||||||| ||| |||| ||| | || || | Sbjct 2004 GTCTCCGATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCATT 2063 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 ||||| ||||| | | || || | ||| || | | || |||||||| ||||| Sbjct 2064 CGCATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATCAAGAGACT 2123 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 |||||||| || ||||| ||||| ||||| || || || || ||||| || |||||||| Sbjct 2124 GTACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGGCCTC 2183 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC-----TATTCCG 42469 ||| |||| || ||| | |||| || | | ||| || || || | ||| Sbjct 2184 GGTCACCTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTTGTCCA 2243 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 || || || ||||| || |||| || ||||| || || | | ||| ||| | | Sbjct 2244 TCGCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCACTCAGC 2303 Query 42530 TTATTCCAAT---CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 || | ||| | | | ||||| || | |||||||| || || ||||| |||||| Sbjct 2304 TTCTCCCAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCCAGAATGAT 2363 Query 42587 GCTTCTGCCTTTTTATACAT 42606 || | | || || ||||| Sbjct 2364 GCCTAGGTTTTCTTCTACAT 2383 >seq118491 Length=654 Score = 118 bits (130), Expect = 1e-21 Identities = 286/430 (67%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| |||||| || | || ||||| || ||||||||||| || || |||||| Sbjct 9 ACTCGCAACATGGGGAGAAGGCCATTAGAGATTCCATTGGTCCCCGAAATTACGCTTCCT 68 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 |||| | || ||| || | || || ||||| || || ||||||| ||| Sbjct 69 GTGGCCCTGATCTTGTGGATGTTGACCCCGATCCCCCCAGCGGACTTGGAGATTAGTGCA 128 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || |||| | ||| ||| | || || || ||||| || || |||| | || | ||| Sbjct 129 CACTGTTTCAGCGTTTCAAATATACCGTCCATACTGTCCTCTTTCATAGTCAGCAAGAAA 188 Query 72394 CAGCTAGACATTTGGTGACGACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||||| | | ||| | || ||| || |||||||| | ||| || | || || Sbjct 189 CAGCTCGCAAGTTG----AGCCTTGTTGGTACCAGCATTAAAGAGGGTCGGTGTGGCATG 244 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 72508 |||||||||| || |||| || ||||| || |||||||| | |||| ||| || Sbjct 245 TATAAACCATTTCTCCGACATAAGGTTGTAGGTTTCAATAGCGGCGTCTAAATCTTCAAA 304 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || ||||| | || || | ||| ||||| || || || | ||||| | || || Sbjct 305 G-TGAATTCCGAGGGCTACCCTCATCAACATGTGTTGTGGGCGCTCAACTACTTTCCCAT 363 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 |||||| | | ||| || | || | ||||| | ||||| || |||| | ||||| Sbjct 364 CTATTTTGAGTAGGTACGACCTCTCTAGGGTTTTGATGCCAAAGTACGTGTACGTAAAGT 423 Query 72629 CTCGTTCGTA 72638 | || ||||| Sbjct 424 CACGGTCGTA 433 >seq93348 Length=6301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| || | ||| || |||||||||||||| |||||||| || ||||| ||||| ||||| Sbjct 5117 ATCCTTGATATAGGTGTCGATCAAAAGACTGTACATTTCAGATTGAATATTTTCCATGGC 5176 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| || || ||||| || |||||||||| ||||| Sbjct 5177 AATCTGGAAGCCATAGAAGCACCTGGCCTCGGCCACCTG 5215 >seq195337 Length=3657 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||||||||| || ||||| || || | ||| ||| | || ||||| |||||||| | Sbjct 396 TCCATCCGTAGAAGTGCATGCTTGTGATTTTCCCGTAGTTCGGCTCGGCGATGTGAATGT 455 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||| ||||| ||||||||||| || | ||| || ||||| || || | || | Sbjct 456 TCAGCGACTGGCTTTGGTCGATGAAGGCACCGCGGTCGGCCGCCATCTTGATCACGGTTT 515 Query 70988 TTTGTGGAATTTCCCA 71003 | || | ||| ||||| Sbjct 516 TCTGCGAAATCTCCCA 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669357610658160