Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq184351 131 2e-25 seq118554 114 2e-20 seq142262 96.9 5e-15 seq88155 87.8 3e-12 >seq184351 Length=2863 Score = 131 bits (144), Expect = 2e-25 Identities = 233/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 |||| |||| | || || || || ||||| ||| || || |||||||||||||| | Sbjct 2489 TTCCGGAGGCGCGCTGTTTCTATGGTTTCCAGATCGCCATGGAAAACGTGCACTCGGAGA 2430 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGC---AACGTAAACACATGCTCT 125334 ||||| |||||||||| ||||| ||||| ||| | || ||| ||||| | Sbjct 2429 TGTACAGCCTGCTGATTGACAGCTACATCCGCGACCCGGCCGAGCG---ACAGATGCTGT 2373 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 | |||| | || || |||||| | || ||||| | |||| | | | ||||| Sbjct 2372 TCCACGCCGTGGAGACCATGCCGTGCGTGCGGCGCAAGGCGGACTGGGCGCTGCAGTGGA 2313 Query 125395 TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 ||| | | | | ||| || ||| | || ||||| ||||| || || |||||| Sbjct 2312 TCGCCAGCAAGGACACGACGTTCGGCGAGCGGCTTGTGGCCTTCGCTGCGGTGGAGGGCG 2253 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 | || || ||||| |||||||||||||| ||||| || |||||||| || | |||| Sbjct 2252 TGTTTTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTGAAAAAGCGCGGGCTGCTCCCCG 2193 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 | |||||| | ||||||| | || |||||||||| Sbjct 2192 GCCTGACGTTCTCTAACGAGCTGATCAGCCGAGACGAGG 2154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 || |||||| |||||| |||||||||||| | || ||| | |||||| ||||| ||| Sbjct 2096 CTGCCGGTCGCCATGATCGGCATGAACTGCGACCTCATGAAGGCGTACATCGAGTTCGTG 2037 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || || || || ||| |||| || ||| ||| |||| |||| | || ||||| Sbjct 2036 GCGGACCGGCTGCTGGCCGAGCTGCGATGCCCGAAGGTTTATAACGTGGAAAACCCCTTC 1977 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 || |||||| | ||| || || |||| ||| | ||||| |||||||||| Sbjct 1976 GACTTCATGGAGAACATCTCGCTGCAGGGCAAGGCAAACTTCTTCGAGAAGA 1925 >seq118554 Length=928 Score = 114 bits (126), Expect = 2e-20 Identities = 382/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 ||| || |||| || ||| ||| || ||||| || |||| ||||| |||||| | Sbjct 882 CCTTTGCTGACCACGAAGCGTGTATTCTGGAAGGGGGTTGTCGAAGAGCTTTTGTGGCTT 823 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA---AAGGGTGTACACATTTGGAGC 70012 || || | || || ||||| || ||| |||| || |||| ||||| ||| | Sbjct 822 GTTCGGGGCTGTACGAACGCCAAGGATCTGT-CCGATAAAAAGGTG--CACATATGGGAC 766 Query 70013 GGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGAT 70072 | |||| || ||| | ||||||| || ||| | | || | | ||| || Sbjct 765 GCCAACTGTTCACGAGACTTTTTGGACAGGCGCGGACTAAATCACTATGAGGTGGGAGAC 706 Query 70073 CTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAG 70132 |||| || || || || || || |||||||||| || | | ||| || | | Sbjct 705 TTGGGTCCTGTCTATGGCTTTCAATGGAGGCACTTTGGTGCAGAATATAAGGATAGGCAT 646 Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACC 70192 || || || |||| |||||||| || || ||| | |||| | || | |||| Sbjct 645 ACGGATTACACGGGGCAGGGTGTGGACCAGTTGGCCCAAGTCATCCAAACCGTAAAGAAT 586 Query 70193 AATCCA-ACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAAT 70251 | || | || |||||||| | |||| | ||||||| || ||||| ||| | || Sbjct 585 GACCCTGATAGC-AGGAGGATTATCATGTCCGCATGGAACCCACCAGATCTGCCTAAGAT 527 Query 70252 GGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC--TCGTACGATGGCAAATTGTCA 70309 | | ||||| || ||||| ||| | ||||||||| | ||| | ||| | | || Sbjct 526 GACGCTACCCCCCTGTCATGCTTTTGTCCAGTTTTACGTTTGTA--ACGGCGAGCTCTCC 469 Query 70310 TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGC 70369 ||| |||| ||| | | |||||||| ||||| || || || || ||||| ||| Sbjct 468 TGCCATCTGTACCAGCGCTCCGGGGACATGGGGCTCGGCGTTCCTTTCAATATTGCTAGC 409 Query 70370 TATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG--TTCG 70427 ||| | || |||| ||||||| || ||| | || || | ||||| | ||| || | Sbjct 408 TATAGTCTGCTGACCTACATGATAGCCCACGTCACAGGATT-AAAGC-CTGGAGACTTTG 351 Query 70428 TACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGA 70470 | || | | | || ||||||||||| ||| | |||||| |||| Sbjct 350 TTCATAGCCTGGGAGACGCTCACGTTTATCTCAATCACGTCGA 308 >seq142262 Length=5470 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/199 (71%), Gaps = 13/199 (7%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||||||| |||| || ||||| |||| |||||||| ||||| || |||||||| | Sbjct 193 TGTTTCCCATCCGGTACCACGACATGTGGGGCATGTACAAGAAGGCGCAAGCCTCCTTCT 134 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTT-TGACT 125114 || | |||||||| ||||| ||||| ||| || |||| ||| | ||| Sbjct 133 GGTGTGCAGAAGAGGTGGATCTTGGGAAGGA----TAC----GGCGGACTGGTTGTCACT 82 Query 125115 GAA----ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 ||| | ||||| ||| || |||||| || | || ||||| || | | ||| || Sbjct 81 GAAGCCGGCCGAGCGGCGGTTCATCTCGCACGTTCTCGCTTTCTTCGCGGCCAGCGACGG 22 Query 125171 AATCGTCAACGACAATCTG 125189 ||||||||||| || ||| Sbjct 21 CATCGTCAACGAGAACCTG 3 >seq88155 Length=6096 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950 || || || ||| | ||| | ||| | || || |||||||| ||| | || || || | Sbjct 89 CGTCCTGGTGCTTTCGCCATGTACCTCGAGCCCTGGCACGCTGACATCTTCGAGTTCCTT 148 Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010 || ||||| ||| | ||| |||||| || || ||||| ||||||| || | Sbjct 149 GACGCCCGCAAGAACACGGGCAAAGAAGAGCAGCGTGCTCGGGACCTGTTTTACGCCATG 208 Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGC 97070 ||| | || || |||||||| |||| || | || ||| |||||| || ||||| Sbjct 209 TGGATTCCGGACCTGTTCATGCAGCGGGTGGAGGAGAATGGGGACTGGACTCTCATGTGT 268 Query 97071 CCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG 97118 || | || |||||||| ||||| ||||| |||||||||||| Sbjct 269 CCGCATGAGTGCACCGGTCTGGAGGATTGTTGGGGAGAAGAGTTTGAG 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739092002774160