Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq150367 93.3 4e-14 >seq150367 Length=3699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 367/574 (64%), Gaps = 25/574 (4%) Strand=Plus/Plus Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 ||||||| ||| ||||| |||||||| | || ||||| ||||| || || || || || Sbjct 1839 AACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGTTCATTGGAG 1898 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || || || |||||||| | |||| ||||| | ||||| |||| ||||| || ||| Sbjct 1899 AACGTCAG-CCCGGCATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCAAAGGAGCCC 1957 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || |||| || || ||| || |||| ||| ||| Sbjct 1958 GAGAAAAAGATGTCTTCCACCGCATTAAAGGC----AACC---------ACGCTGCATTG 2004 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | ||| | ||||| | ||||| | || || | || | || | | | || Sbjct 2005 T--CTC-CGATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCA 2061 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 | || || || | | | || |||| || || | || || ||||| | Sbjct 2062 TTCGCATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATCAAGAGA 2121 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 || |||||||| || |||||||||||||| || |||||||| || || || || || ||| Sbjct 2122 CTGTACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGGCC 2181 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC-----TATCC 13556 || | |||| || || | ||||| || | | || || || || | | Sbjct 2182 TCGGTCACCTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTTGTC 2241 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA 13616 | || ||||| ||||| || || || | ||| || || || | | ||| || || || Sbjct 2242 CATCGCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCACTCA 2301 Query 13617 ACTTTAACCAATCTGGAAA---ATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAG 13673 ||| ||| | | || ||||| || | ||||| |||||||| ||||| || | Sbjct 2302 GCTTCTCCCAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCCAGAATG 2361 Query 13674 AAGCAACAGCCTTCTTATACATCATCCATATATC 13707 | || | ||||| |||||| |||||| || Sbjct 2362 ATGCCTAGGTTTTCTTCTACATCCGCCATATGTC 2395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429866926773132