Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq150367 118 2e-21 seq114 111 4e-19 seq178124 109 1e-18 seq93348 109 1e-18 >seq150367 Length=3699 Score = 118 bits (130), Expect = 2e-21 Identities = 288/435 (66%), Gaps = 21/435 (5%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGT-----ATCGTTAACGAAAATCTAGTAGAGAAGT 268910 || || || ||||| | ||| ||||| | ||| || || ||||| || |||| | Sbjct 2266 CTGGCATTCTTTGCGGCTAGCGATGGACAACCAACGTCAATGAGAATCTGGTGGAGAGAT 2207 Query 268911 TCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAG 268970 || | |||||||| || | | || ||||| || || || || ||||| || || || | Sbjct 2206 TCAGCCAAGAGGTCAAGGTGACCGAGGCCAGGTGCTTCTAGGGCTTCCAAATTGCCATGG 2147 Query 268971 AAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACG 269030 |||||||||| || || ||||||||||| || || || || | || | ||| | | Sbjct 2146 AAAATATTCACTCTGAAATGTACAGTCTCTTGATCGACACCTTCATCAAGGATCCACAGG 2087 Query 269031 AAAAGAAAAGACTATTTTCTTC-TATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 | ||| | || || | | ||||| || | | |||| | || || ||||| Sbjct 2086 AGAAGGAGCACCTCTTCAATGCGAATGAG-ACCACGCCGTGTGCAAAGAAGAAGGCTGAA 2028 Query 269090 TGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 |||||||| | |||||| || | || || | ||||| ||| Sbjct 2027 TGGGCTCTTAGATGGATCGGAGACAATGC-------------AGCGTGGTTGCCTTTAAT 1981 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || |||| || || || ||||| || ||||| |||| | ||||| |||| || | | Sbjct 1980 GCGGTGGAAGACATCTTTTTCTCGGGCTCCTTTGCAGCTAACATTTGGCTGAAAAAGATA 1921 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || | ||||| || | || ||||| || ||| |||| || ||||| || || ||||| Sbjct 1920 GGGATAATGCC-GGGCTGACGTTCTCCAATGAACTGATCAGTAGGGATGAGGGCCTACAC 1862 Query 269270 TGCGACTTCGCTTGT 269284 || ||||| || ||| Sbjct 1861 TGTGACTTTGCCTGT 1847 >seq114 Length=3964 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| || || | ||| || || || || || || || || || Sbjct 3083 TTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATA 3024 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||| ||||| || || ||||| || Sbjct 3023 AGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCG 2964 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | || ||| || || ||||| || || || |||||||| || || || || ||||| Sbjct 2963 ATAGTGTCGGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAA 2904 Query 104552 ATCTGCATTTT 104562 ||||||||||| Sbjct 2903 ATCTGCATTTT 2893 >seq178124 Length=5838 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||||||||| || |||||||| || |||| ||| | |||||| | ||| | | || Sbjct 2447 GATGGTATCGTCAATGAAAATCTGGTGGAGAGATTCAGCCAAGAGATCCAGGTGGCCGAG 2388 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 ||||| || || || || |||||||| || || ||| ||||||| || || ||||||||| Sbjct 2387 GCCAGGTGCTTCTATGGCTTCCAGATTGCCATGGAAGATATTCAATCTGAAATGTACAGT 2328 Query 268997 CTATTAATAGATACTTATAT 269016 || || || || || ||||| Sbjct 2327 CTCTTGATCGACACCTATAT 2308 >seq93348 Length=6301 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||||||||| || || ||||| || |||| ||| | |||||| | ||| | | || Sbjct 5263 GATGGTATCGTCAATGACAATCTGGTGGAGAGATTCAGCCAAGAGATCCAGGTGGCCGAG 5204 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 ||||| || || || || |||||||| || || ||||||||||| || || ||||||||| Sbjct 5203 GCCAGGTGCTTCTATGGCTTCCAGATTGCCATGGAAAATATTCAATCTGAAATGTACAGT 5144 Query 268997 CTATTAATAGATACTTATAT 269016 || || || || || ||||| Sbjct 5143 CTTTTGATCGACACCTATAT 5124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148265514757128