Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq118554 185 6e-42 seq46062 100 2e-16 seq82958 96.9 2e-15 >seq118554 Length=928 Score = 185 bits (204), Expect = 6e-42 Identities = 423/625 (68%), Gaps = 15/625 (2%) Strand=Plus/Plus Query 25344 TTAAAGTCGTCCA-GGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 25402 ||||||||||| | |||| || || | | || || | || ||||| ||||| | || Sbjct 221 TTAAAGTCGTCGATGGCTTTC-ACGCGGCAATTGATATTGAGAGTGGGGAAGGGCCGCGG 279 Query 25403 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCC 25462 ||||||| | || || || | || ||||||| || || |||||||||||||| Sbjct 280 CTCCCTCCTCAATTGTTCATTAAGAGCATCGACGTGATTGAGATAAACGTGAGCGTCTCC 339 Query 25463 CAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAG 25522 ||| | || ||||| ||||| || | || || || |||| || |||||||| || || Sbjct 340 CAGGCTATGAACAAAGTCTCCAGGCTTTAATCCTGTGACGTGGGCTATCATGTAGGTCAG 399 Query 25523 GAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGT 25582 ||| ||||| || || || || || || |||| |||||||| |||| || | ||||| Sbjct 400 CAGACTATAGCTAGCAATATTGAAAGGAACGCCGAGCCCCATGT-CCCCGGAGCGCTGGT 458 Query 25583 AGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACT-GACACATGGTGTAGCACGGA 25641 | || || || |||||||| ||| | |||||||||| |||| | | | || || Sbjct 459 ACAGATGGCAGGAGAGCTCGCCGTTACAAACGTAAAACTGGACA-AAAGCATGACAGGGG 517 Query 25642 GGAAGAG--CTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGT 25699 || || | | | ||| || ||| |||||||| ||| ||| ||| || | |||| Sbjct 518 GGTAGCGTCATCTTAGG--CAGATCTGGTGGGTTCCATGCGGACATGATAATCCTCCTGC 575 Query 25700 CTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTG---CAGCTGATCCACCCCCATCC 25756 || |||| | | | || | | | | || ||| || ||| ||||| ||| || Sbjct 576 TATCAGGGTCATTCTT--TACGGTTTG-GATGACTTGGGCCAACTGGTCCACACCCTGCC 632 Query 25757 CCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGT 25816 ||| ||| || | | | ||| | || ||||| || || | |||||| || || || | Sbjct 633 CCGTGTAATCCGTATGCCTATCCTTATATTCTGCACCAAAGTGCCTCCATTGAAAGCCAT 692 Query 25817 ACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTC 25876 | || || || | |||||| | || ||| | | || | | | ||||||||||||| Sbjct 693 AGACAGGACCCAAGTCTCCCACCTCATAGTGATTTAGTCCGCGCCTGTCCAAAAAGTCTC 752 Query 25877 TGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGG 25936 |||| ||||||||||| || | ||| || ||||| || || |||| ||| || Sbjct 753 GTGAACAGTTGGCGTCCCATATGTGCACCTTTTTATCGGACAGATCCTTGGCGTTCGTAC 812 Query 25937 ACCCTCTGACGAACCACAGCAGCTC 25961 | || | || | ||||| ||||| Sbjct 813 AGCCCCGAACAAGCCACAAAAGCTC 837 >seq46062 Length=4436 Score = 100 bits (110), Expect = 2e-16 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||||||| |||||||||||||||| ||||| || || | ||| || Sbjct 444 GCTATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGAACGCCAAGGCCCGTG 503 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTG 25622 | | || || | |||||| |||||||| || ||||| ||| | |||||| ||||| Sbjct 504 T-CTCCAGAGCGCTGGTACAGCTGACATGACAGCTCACCGTTACACACGTAGAACTG 559 >seq82958 Length=1740 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 25777 TCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCA 25836 ||| ||||||| || || || | |||||||||||| |||||||| || || ||||| || Sbjct 900 TCCTTGTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACAGGGCCCAGGTCCCCC 959 Query 25837 TCTTCCCTGT-GCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCA 25895 || || | |||| | || | ||| |||| ||||||| ||||| ||||| ||||| Sbjct 960 TCCTCATAATGGCTC-AGTCCACGCTTGTCCAGGAAGTCTCGTGAACCGTTGGCATCCCA 1018 Query 25896 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 25955 ||| | ||| || ||||| || || ||| || || | || | |||||||||| Sbjct 1019 GATGTGCACCTTTTTGTCGGAAAGTTCCTTGCCGTCCGTACAGCCGCGAACGAACCACAA 1078 Query 25956 CAGCTCCGCCGTGAC 25970 |||||| | | ||| Sbjct 1079 GAGCTCCTCAGCGAC 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339257252249718