Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq207742 89.7 3e-13 seq6558 87.8 9e-13 seq160899 86.0 3e-12 seq15338 84.2 1e-11 seq205202 82.4 4e-11 seq146771 82.4 4e-11 seq129409 82.4 4e-11 >seq207742 Length=753 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGA-TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||| ||||| | |||| |||||||| ||||||||||||||| ||||||||||||| ||| Sbjct 560 TTGTCCCAT-ATAGGACTCGAACCTACGACCTTCGCGTTATCAGCACGACGCTCTAACCG 502 Query 11514 ACTGAGCTAATGGGCCG 11530 | |||||||||||| || Sbjct 501 ATTGAGCTAATGGGACG 485 >seq6558 Length=2631 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 2298 GGGTCGAACCCACGACCTTCGCGTTATCAGCACAACGCTCTAACCAACTGAGCTAATGGG 2357 Query 11528 CC 11529 || Sbjct 2358 CC 2359 >seq160899 Length=4775 Score = 86.0 bits (94), Expect = 3e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 2 CGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 52 >seq15338 Length=6801 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 6062 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 6121 Query 11528 CCG 11530 ||| Sbjct 6122 CCG 6124 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 2330 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 2389 Query 11528 CC 11529 || Sbjct 2390 CC 2391 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 2665 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 2724 Query 11528 CC 11529 || Sbjct 2725 CC 2726 >seq205202 Length=5302 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 3642 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 3583 Query 11528 CC 11529 || Sbjct 3582 CC 3581 >seq146771 Length=7079 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 6670 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 6729 Query 11528 CC 11529 || Sbjct 6730 CC 6731 >seq129409 Length=6319 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 2387 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 2446 Query 11528 CC 11529 || Sbjct 2447 CC 2448 Lambda K H 0.640 0.410 0.923 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260814405697816