Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq114 87.8 2e-12 seq90790 84.2 2e-11 >seq114 Length=3964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | ||||| ||||| || || || || || Sbjct 3051 ATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATGCCCTCCTT 2992 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| |||||| | | ||||| || | ||||| Sbjct 2991 GTCCTGGATCTTCGCCTTCACATTCTCGATAGTGTCGGACGGCTCGACCTCGAGGGTGAT 2932 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || |||||||| |||||||| Sbjct 2931 GGTCTTACCGGTCAGGGTCTTCACAAAAATCTGCAT 2896 >seq90790 Length=3890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||| || || || || ||||| | || || |||||||| ||| ||| Sbjct 1046 TGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTG 1105 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | ||||| |||| |||||||| || || || || |||||||||||||||||| Sbjct 1106 TCTGAAGGCTCGACCTCAAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACAAAGATCTGC 1165 Query 95006 ATGCTT 95011 ||| || Sbjct 1166 ATGATT 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447101177387760