Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq142507 113 7e-20 seq33786 107 3e-18 >seq142507 Length=2538 Score = 113 bits (124), Expect = 7e-20 Identities = 258/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 193788 TATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGC-ACTCCACTATCAGAAAC 193846 ||||||||||| || |||||| ||||||| | || | ||| | ||||| || || Sbjct 1791 TATCAGGCATCGACAAGCGAAATGTATGG-GCTGGTGCAGGAGATTCCACAGAAGGAGAC 1849 Query 193847 CACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCAT 193906 ||||||||| |||| | || || ||||| | ||| ||| | |||| || ||||| | Sbjct 1850 CACACCATTCTATCCGAGATCCCCCTATGGAGCAGCGAAGGTATATGCATACTGGATAGT 1909 Query 193907 CAAGAATTATCGTGAGTCATA---TGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCA 193963 || || | ||| | || | ||| || | ||| || || ||||| || Sbjct 1910 GGTCAACTACAGAGAGGCCTACAATATATTT---GCCTGCAATGGGATCCTGTTCAACCA 1966 Query 193964 CGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAA 194023 ||| ||||||||| || || ||||||||||| | ||||| || |||| | | || Sbjct 1967 CGAGAGTCCAAGAAGGGGAGAAACATTTGTAACGAGGAAGATAACCAGAGGTGTTGCCAA 2026 Query 194024 GATCTCTGTTGGATTACA-GAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATT 194082 || | | ||| || || ||| | | ||||| |||||| | |||| || |||| Sbjct 2027 AATATTTCACGGACAGCAAGACGATATTGTC-CTTGGGAATCTTGACTCTAACAGAGATT 2085 Query 194083 GGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCG 194142 |||||||||| ||||| || || ||| |||||| | || || || || || | || | Sbjct 2086 GGGGACACGCCAAGGACTACGTCAGAGCCATGTGGATGATCTTACAGCATGAGGTGCCTG 2145 Query 194143 ATGATTATGTGATTGCTACAGG 194164 |||| | ||| || || || || Sbjct 2146 ATGACTTTGTTATAGCCACTGG 2167 >seq33786 Length=3497 Score = 107 bits (118), Expect = 3e-18 Identities = 274/407 (67%), Gaps = 14/407 (3%) Strand=Plus/Minus Query 193772 GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGG--TGGTGTTCTAGGC 193829 |||| |||| | |||| |||||||| || || ||| ||||||| ||||| ||| Sbjct 1931 GAAAAATGTAAGGTTCTACCAGGCATCAACAAGTGAAATGTATGGACTGGTGC---AGGA 1875 Query 193830 ACTCCACTATCAGAA-ACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTT 193888 | ||| | || | ||||| ||||| ||||| | ||||| ||||| | ||| ||| | Sbjct 1874 AATCCCACAGAAGGAGACCACGCCATTCTATCCAAGATCTCCCTATGGAGCAGCGAAGGT 1815 Query 193889 GTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGG 193948 |||| || ||| | | || || | ||| | || | ||| || ||| Sbjct 1814 ATATGCATACTGGGTAGTGGTCAACTACAGGGAGGCCTACAACATGTTCGCCTGTAATGG 1755 Query 193949 TATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTAC 194008 || || ||||| ||||| ||||||||| || || ||||| ||||| | ||||| || Sbjct 1754 GATCCTGTTCAACCACGAGAGTCCAAGAAGGGGGGAAACATTCGTAACGAGAAAGATAAC 1695 Query 194009 ACAAGGTTTATCTAAGATCTCTGTTGGATTA-CAGAA-GATTCTTTAT-CTTGGTAATCT 194065 ||| | | || ||| || |||| | || || || | |||| ||||| ||||| Sbjct 1694 CAGAGGCGTGGCCAAAATC-CTTTTGGGGCAGCAAAATGA--CATTATACTTGGAAATCT 1638 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | |||| || ||||||||||| || ||||| || | ||||||||| | || | Sbjct 1637 CGACTCTAAAAGAGATTGGGGACATGCCAAGGACTACGCCAGGGCGATGTGGATGATTCT 1578 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGT 194172 || || || | |||||||| | ||| || || |||||| ||||| Sbjct 1577 ACAGCATGAGGTGCCCGATGACTTTGTCATAGCCACAGGT--ACAGT 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 805411484154960