Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq150367 136 4e-27 seq178124 95.1 1e-14 seq93348 95.1 1e-14 >seq150367 Length=3699 Score = 136 bits (150), Expect = 4e-27 Identities = 262/386 (68%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||||| | | |||||| || || || ||||| ||| || || || | || || Sbjct 2010 GATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCATTCGCATT 2069 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || |||| || ||| | | ||| ||| | || ||||| || ||| ||||| Sbjct 2070 GAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATCAAGAGACTGTACAT 2129 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||||| || | ||| ||||| ||||||||||| || ||||| || || || || || | Sbjct 2130 TTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGGCCTCGGTCAC 2189 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGAC-----TATACCATCGGAT 93505 || || ||||| |||||||| || ||||| |||||||| | |||||| Sbjct 2190 CTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTTGTCCATCGCTA 2249 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 || ||||| || |||| | || || || || ||| | | ||||| | ||||| ||| Sbjct 2250 GCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCACTCAGCTTCTCC 2309 Query 93566 CAATCGG---ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 || | || | ||||| || || || ||||| || || ||||| || ||||| | Sbjct 2310 CAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCCAGAATGATGCCTAG 2369 Query 93623 GCTTTTTTGTACATATCCCATATGTC 93648 | ||| || ||||| ||||||||| Sbjct 2370 GTTTTCTTCTACATCCGCCATATGTC 2395 >seq178124 Length=5838 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || ||||| || ||| ||||||||||| || | || ||||| ||||| ||| Sbjct 2308 ATATAGGTGTCGATCAAGAGACTGTACATTTCAGATTGAATATCTTCCATGGCAATCTGG 2367 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| || || || || | | ||| | ||||| |||||||| || ||| Sbjct 2368 AAGCCATAGAAGCACCTGGCCTCGGCCACCTGGATCTCTTGGCTGAATCTCTCCACCAGA 2427 Query 93482 TTTTCATTGACTATACCATC 93501 ||||||||||| |||||||| Sbjct 2428 TTTTCATTGACGATACCATC 2447 >seq93348 Length=6301 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || ||||| || ||| ||||||||||| || | ||| ||||| ||||| ||| Sbjct 5124 ATATAGGTGTCGATCAAAAGACTGTACATTTCAGATTGAATATTTTCCATGGCAATCTGG 5183 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| || || || || | | ||| | ||||| |||||||| || ||| Sbjct 5184 AAGCCATAGAAGCACCTGGCCTCGGCCACCTGGATCTCTTGGCTGAATCTCTCCACCAGA 5243 Query 93482 TTTTCATTGACTATACCATC 93501 || |||||||| |||||||| Sbjct 5244 TTGTCATTGACGATACCATC 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555382571241840