Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq33786 154 3e-32 seq142507 140 6e-28 seq184351 107 4e-18 seq90790 105 1e-17 seq37729 84.2 4e-11 >seq33786 Length=3497 Score = 154 bits (170), Expect = 3e-32 Identities = 363/541 (67%), Gaps = 18/541 (3%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || || || |||||||| || ||| | | ||| || || ||||||| || | Sbjct 1539 CCTGTGGCTATGACAAAGTCATCGGGCACCTCATGCTGTAGAATCATCCACATCGCCCTG 1598 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGG-CA 268329 | |||||| ||||| |||||||| | || | ||| | || || || | | | || Sbjct 1599 GCGTAGTCCTTGGCATGTCCCCAATCTCTTTTAGAGTCGAGATTTCCAAGTATAATGTCA 1658 Query 268330 TTTCTGCTTGCCGA----GCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGA 268385 ||| |||| || | | || || || | || | || || |||| || |||| Sbjct 1659 TTT-TGCTGCCCCAAAAGGATTTTGGC---CACG-CCTCTGGTTATCTTTCTCGTTACGA 1713 Query 268386 ACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGC 268445 | || || || | | || |||||||||||||| ||||| || || || ||||||||| Sbjct 1714 ATGTTTCCCCCCTTCTTGGACTCTCGTGGTTGAACAGGATCCCATTACAGGCGAACATGT 1773 Query 268446 CATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACG 268505 || ||||| | |||||| || || |||||||||| | | ||| || || | || | Sbjct 1774 TGTAGGCCTCCCTGTAGTTGACCACTACCCAGTATGCATATACCTTCGCTGCTCCATAGG 1833 Query 268506 GAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGA 268565 |||| | ||||| ||| ||||| || ||| || |||||||| | || ||| | | Sbjct 1834 GAGATCTTGGATAGAATGGCGTGGTCTCCTTCTGTGGGATTTCCTGCACCAGTCCATACA 1893 Query 268566 GCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATT----CGG 268621 || || ||||| ||||||||| | | |||||||| | | || | || Sbjct 1894 TTTCACTTGTTGATGCCTGGTAGAACCT--TACATTTTTCGAAA--GTCGAGTCGCCCGT 1949 Query 268622 ATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATC 268681 ||||| || | | ||| || || || |||||||| ||||| || || || | || Sbjct 1950 ATTGCGTCTAATATACGGAGCACACCAATCCCATCCACATCCGCCGTGTATTCTGCCAAG 2009 Query 268682 TCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACC 268741 |||| ||||||| |||||| ||||| || ||| ||| |||| |||||| || | ||| Sbjct 2010 CCGAAAGACACCTTGACATGACTCTGTGCTGCCATGTTGTAAATCTCATCAGGCTGCACC 2069 Query 268742 T 268742 | Sbjct 2070 T 2070 >seq142507 Length=2538 Score = 140 bits (154), Expect = 6e-28 Identities = 389/590 (66%), Gaps = 14/590 (2%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 ||||| || || |||||||| || ||| | | ||| | || ||||||| ||| | Sbjct 2167 CCAGTGGCTATAACAAAGTCATCAGGCACCTCATGCTGTAAGATCATCCACATGGCTCTG 2108 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || |||||| || || |||||||| | || | ||| | ||||| |||| || || Sbjct 2107 ACGTAGTCCTTGGCGTGTCCCCAATCTCTGTTAGAGTCAAGATTCCCAAGGA-CA---AT 2052 Query 268331 TTCTGCTTGCCGAGCTTCACGCGT----GCAAGACCGCGAGTGATTTTTCGGGTCACGAA 268386 || ||||| | | | | | |||| ||| | || || || | || || || Sbjct 2051 ATCGTCTTGCTGTCCGTGAAATATTTTGGCAACACCTCTGGTTATCTTCCTCGTTACAAA 1992 Query 268387 CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCC 268446 || || || | | || |||||||||||||| ||||| || ||||| || || || Sbjct 1991 TGTTTCTCCCCTTCTTGGACTCTCGTGGTTGAACAGGATCCCATTGCAGGCAAATATATT 1932 Query 268447 ATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGG 268506 || ||||| | |||||| || || ||||||||||| | | ||| || || | || || Sbjct 1931 GTAGGCCTCTCTGTAGTTGACCACTATCCAGTATGCATATACCTTCGCTGCTCCATAGGG 1872 Query 268507 AGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAG 268566 || | |||| ||| || || || ||| || || || || | || ||| | | Sbjct 1871 GGATCTCGGATAGAATGGTGTGGTCTCCTTCTGTGGAATCTCCTGCACCAGCCCATACAT 1812 Query 268567 CTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT--TCGGATT 268624 ||| |||||||| || || |||||| | ||||| |||| | ||| | ||| || Sbjct 1811 TTCGCTTGTCGATGCCTGATAAAACTTTAT--ATTTTTAGAGAGCCCAGTTGCTCGTATA 1754 Query 268625 GCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCG 268684 || || | | ||| || || | |||||||| || || || || || | | | Sbjct 1753 GCGTCTAATATACGGAGCACGCCGACCCCATCCACATCTGCCGTGTATTCAGCAAGGCCA 1694 Query 268685 AATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGC 268744 || || |||| ||||||||||| || ||| ||| |||| |||||| || || |||| | Sbjct 1693 AAAGATACCTTAACATGGCTCTGTGCTGCCAAGTTGTAAATCTCATCAGGCTTCACCT-C 1635 Query 268745 TGC-ACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 || | ||||| || || || ||| || | |||||| || |||| Sbjct 1634 AGCTATAATCTTGACTAGACATGTACTGTCTGTCATGTCTCCATAATGCA 1585 >seq184351 Length=2863 Score = 107 bits (118), Expect = 4e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 9944 CGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAAT 10003 |||||||||||| || | || | |||||||||||| | |||||||| || || || Sbjct 1902 CGCCTTCTGGTATTCAGCGACTCTCTTCTCGAAGAAGTTTGCCTTGCCCTGCAGCGAGAT 1961 Query 10004 GAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGT 10063 | |||||||||||| |||||||| || || | | ||| ||| | | || | | Sbjct 1962 GTTCTCCATGAAGTCGAAGGGGTTTTCCACGTTATAAACCTTCGGGCATCGCAGCTCGGC 2021 Query 10064 GAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAAT 10123 | | ||||| |||||||||||||||||| |||| ||||| |||||||||| || Sbjct 2022 CAGCAGCCGGTCCGCCACGAACTCGATGTACGCCTTCATGAGGTCGCAGTTCATGCCGAT 2081 Query 10124 CATG 10127 |||| Sbjct 2082 CATG 2085 >seq90790 Length=3890 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 1046 TGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTG 1105 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | || || || | ||||||||| || || || ||||| || || || |||||| Sbjct 1106 TCTGAAGGCTCGACCTCAAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACAAAGATCTGC 1165 Query 68460 ATTATGCT 68467 || || || Sbjct 1166 ATGATTCT 1173 >seq37729 Length=4247 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | ||||||| | |||||||||||||| Sbjct 2468 GCGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 2409 Query 84514 GCCCCACATCGGGC 84527 |||||||||||||| Sbjct 2408 GCCCCACATCGGGC 2395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919175884217520