Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq184351 210 4e-49 seq150367 170 4e-37 seq88155 118 2e-21 seq195337 114 2e-20 seq23123 111 3e-19 seq208936 89.7 1e-12 >seq184351 Length=2863 Score = 210 bits (232), Expect = 4e-49 Identities = 245/331 (74%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||||||||| ||||| || |||||||| ||||| || ||||||||||| ||| ||||| Sbjct 2484 GAGGCGCGCTGTTTCTATGGTTTCCAGATCGCCATGGAAAACGTGCACTCGGAGATGTAC 2425 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||| | ||| ||||||| || || | |||||| | ||||||| | ||| Sbjct 2424 AGCCTGCTGATTGACAGCTACATCCGCGACCCGGCCGAGCGACAGATGCTGTTCCACGCC 2365 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 ||||||| ||||| ||| | | ||||||||||||||||| | ||||||| || Sbjct 2364 GTGGAGACCATGCCGTGCGTGCGGCGCAAGGCGGACTGGGCGCTGCAGTGGATCGCCAGC 2305 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 ||| | |||||||||||| |||| || ||||| | || || |||||| | || ||| Sbjct 2304 AAGGACACGACGTTCGGCGAGCGGCTTGTGGCCTTCGCTGCGGTGGAGGGCGTGTTTTTC 2245 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACC 42800 |||||| | || || ||||||||||||| || || | | | | ||||| || || Sbjct 2244 TCGGGCTCGTTTGCGGCCATCTTCTGGCTGAAAAAGCGCGGGCTGCTCCCCGGCCTGACG 2185 Query 42801 TTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| ||||| || |||||| | ||||||| Sbjct 2184 TTCTCTAACGAGCTGATCAGCCGAGACGAGG 2154 Score = 109 bits (120), Expect = 1e-18 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 ||||||| || || || ||||||||||| |||||||||| ||||||| ||| || Sbjct 2098 CGCTGCCGGTCGCCATGATCGGCATGAACTGCGACCTCATGAAGGCGTACATCGAGTTCG 2039 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGG-TCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 | || |||| || ||| | || || | | | | | | || ||| | |||| Sbjct 2038 TGGCGGACCGGCTGCTGGCCGAGCTGCGATGCCCGAAGGTT-TATAACGTGGAAAACCCC 1980 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 |||||||| ||||||||||||||| || |||||||| | ||||| ||||||||| | ||| Sbjct 1979 TTCGACTTCATGGAGAACATCTCGCTGCAGGGCAAGGCAAACTTCTTCGAGAAGAGAGTC 1920 Query 43134 GCCGACTACCAG 43145 || || |||||| Sbjct 1919 GCTGAATACCAG 1908 >seq150367 Length=3699 Score = 170 bits (188), Expect = 4e-37 Identities = 545/842 (65%), Gaps = 40/842 (5%) Strand=Plus/Minus Query 42297 GACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGAC 42356 ||||| ||| ||||| ||||| | || || |||||| | ||||| | ||| Sbjct 2395 GACATATGGCGGATGTAGAAGAAAACCTAGGCATCATTCTGGACAGTTGAGGAAGTAGAC 2336 Query 42357 CTGGCCAA---GGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTC 42413 || | || |||| |||| ||||||| ||| ||| || ||| ||| || Sbjct 2335 CTCTCGAAAGAGGACTTGGCCTACTGGGAGAAGCTGAGTGATGACAAAAGACACTTCATC 2276 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGG-----CATAGTCAATGAGAACCTGG 42468 ||| || | ||||| ||||| || || || || || ||||||||||| |||| Sbjct 2275 AAACACGTCCTGGCATTCTTTGCGGCTAGCGATGGACAACCAACGTCAATGAGAATCTGG 2216 Query 42469 CCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGA 42528 || |||| ||||||| || ||||| | |||||||| |||||||| | Sbjct 2215 TGGAGAGATTCAGCCAAGAGGTCAAGGTGACCGAGGCCAGGTGCTTCTAGGGCTTCCAAA 2156 Query 42529 TAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGG 42588 | ||||| || || | |||||||| ||||| || || |||| | |||| || Sbjct 2155 TTGCCATGGAAAATATTCACTCTGAAATGTACAGTCTCTTGATCGACACCTTCATCAAGG 2096 Query 42589 ATCCCGTCGAGCGTAACGGGC---TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGA 42645 |||| ||| || | || | ||||| || | ||||| | ||| || |||| Sbjct 2095 ATCCACAGGAG---AAGGAGCACCTCTTCAATGCGAATGAGACCACGCCGTGTGCAAAGA 2039 Query 42646 AGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGC 42705 ||||||| || ||||| || | ||||||| || ||| | | ||| Sbjct 2038 AGAAGGCTGAATGGGCTCTTAGATGGATCG--------GAGACAATG--CAGCG------ 1995 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||||| || || || | |||||| ||||||||| |||| || | | | | | Sbjct 1994 TGGTTGCCTTTAATGCGGTGGAAGACATCTTTTTCTCGGGCTCCTTTGCAGCTAACATTT 1935 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| || ||| | | ||||| || || || ||||| || ||||| ||||| |||| Sbjct 1934 GGCTGAAAAAGATAGGGATAATGCCGGG-CTGACGTTCTCCAATGAACTGATCAGTAGGG 1876 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 | ||||| || || | ||||||||||| || ||||| | || | |||||| Sbjct 1875 ATGAGGGCCTACACTGTGACTTTGCCTGTCTGATGTTC---GGACATTTGGTTAACAAGC 1819 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 | |||||| ||| | |||||| | |||||| |||| | ||||||||| Sbjct 1818 CTAGTGAGGAGCCCATCCACGAGATCATCGACAATGCCGTGAAGATTGCTCAGGAGTTCC 1759 Query 42946 TCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 | ||| || | || ||| || ||| | || ||||| | ||||| | | |||| | Sbjct 1758 TGACGGAGGCTCTTCCCCTGAAGCTGATTGGTATGAAAAATGACCTGAGGAAACAGTATA 1699 Query 43006 TCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGC 43065 || || || || | || || || | | | | ||| ||||||||| Sbjct 1698 TCGTGTTTGTAGCAGGCCGGCTATTGGGTGAACTCGAGTGCAGTAAGATCTACAACA--- 1642 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 || || ||||| |||||||||||||| ||||||| ||| ||||||| ||||||| Sbjct 1641 ---ATCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGGAAGGCCAACTTCTTCGAGA 1585 Query 43126 AG 43127 || Sbjct 1584 AG 1583 >seq88155 Length=6096 Score = 118 bits (130), Expect = 2e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||| ||| || Sbjct 1463 GTGTACTCGACAATCTCTGTGCAGAGGTTACTACACTTGATGGTCCCCAGGTTCTGCTGG 1404 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 || ||||| |||||| || |||||||| |||||| |||| || ||||| |||| Sbjct 1403 TTCGACTTCTTGTTGCACGCATCCTTGTACAGCATGTAGGGGTTTCCCGTCTCTGTCTGG 1344 Query 244841 GCGACGAGGA 244850 || ||| || Sbjct 1343 GCCTCGATGA 1334 Score = 93.3 bits (102), Expect = 8e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 ||||| || ||| ||||| ||||| || || || |||| |||| ||| Sbjct 327 GTGTAGAGTTTCTCAAACTCTTCTCCCCAACAATCCTCCAGACCGGTGCACTCATGCGGA 268 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||||||| |||| || || |||| |||| ||||||||| ||||| || ||||| Sbjct 267 CACATGAGAGTCCAGTCCCCATTCTCCTCCACCCGCTGCATGAACAGGTCCGGAATCCAC 208 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 | ||| | || ||||||| | | |||||| || ||| |||||||| | || Sbjct 207 ATGGCGTAAAACAGGTCCCGAGCACGCTGCTCTTCTTTGCCCGTGTTCTTGCGGGCGTCA 148 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | || || |||| ||| ||||||||||||| | ||| | |||| || || || ||| Sbjct 147 AGGAACTCGAAGATGTCAGCGTGCCAGGGCTCGAGGTACATGGCGAAAGCACCAGGACGC 88 Query 245153 T 245153 | Sbjct 87 T 87 >seq195337 Length=3657 Score = 114 bits (126), Expect = 2e-20 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| |||||||||||||||||||| || ||||||||||| ||||||| || || Sbjct 2734 GTGTACTCCACAATCTCGGTGCAGAGGTTGCTACACTTGATGGTCCCCAGGTTTTGCTGG 2793 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 |||||||| |||||| || |||||||| |||||| |||| |||||||| Sbjct 2794 TTGGACTTCTTGTTGCACGCATCCTTGTACAGCATGTAGGGGTTTCCGGTCTC 2846 >seq23123 Length=2086 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| ||||| || |||||||| | ||| ||||| |||||| || | ||||||| Sbjct 571 ACCTGGAACTCCCCAGACAGCACCCTGCGTGTGTAGATGTTGCTTGTGTAGGCCTCGATG 630 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| ||||||||||||||| | || |||||| Sbjct 631 GACTCGTTGTTACCCAGGATCTGTGCGGTGGACGCAGTCGGCATGGGGGCCAGCAGCAGG 690 Query 244217 CTGTTCCTCACGCCGT 244232 ||||||||||| |||| Sbjct 691 CTGTTCCTCACTCCGT 706 >seq208936 Length=1094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| ||||||| || | ||||||| ||| ||||||| || || || |||||| Sbjct 10 GTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCGAGGATTTGAGCCGTGGA 69 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 ||||||||||||||| | || |||||| ||||||||||| || Sbjct 70 CGCAGTCGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACTCC 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941832380768160