Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq46062 98.7 9e-16 seq82958 87.8 2e-12 >seq46062 Length=4436 Score = 98.7 bits (108), Expect = 9e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||| | || || | ||| || || | ||| || |||||||| ||||| || ||| Sbjct 429 AGTCCAGTGATGTGGGCTATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGA 488 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || | ||| ||||||| || | ||| ||||||||||| || |||||||||| | Sbjct 489 ACGCCAAGGCCCGTGTCTCCAGAGCGCTGGTACAGCTGACATGACAGCTCACCGTTACAC 548 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 || || || || || ||||||||| || ||||||||| Sbjct 549 ACGTAGAACTGGACGAAGGCGTGACAGGGAGGCAGCGCCATC 590 >seq82958 Length=1740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | || |||||||||||||||||||||||||| ||||| |||| ||||||||| Sbjct 905 GTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACAGGGCCCAGGTCCCCCTCCTC 964 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 || ||| || ||| | ||||||| || | || || || ||||| || | Sbjct 965 ATAATGGCTCAGTCCACGCTTGTCCAGGAAGTCTCGTGAACCGTTGGCATCCCAGATGTG 1024 Query 20647 GACTCCTGTTCT-TGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCT 20705 || | | || | ||||| ||| || ||| |||| || | ||||| | |||| Sbjct 1025 CAC-CTTTTTGTCGGAAAGTTCCTTGCCGTCCGTACAGCCGCGAACGAACCACAAGAGCT 1083 Query 20706 CTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTG 20757 | | | || |||| ||| ||||| || ||||| || || || ||||| || Sbjct 1084 CCTCAGCGACCCCTCTCCAGAACACACGTTTTGTAGTCAGCAAAGGAAACTG 1135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440201142799440