Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq114 107 2e-18 seq82192 91.5 2e-13 seq147940 86.0 7e-12 seq142975 86.0 7e-12 seq39877 86.0 7e-12 seq35616 84.2 2e-11 seq192152 82.4 8e-11 >seq114 Length=3964 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| |||| ||| || || | || || |||||||| || ||||| | Sbjct 3085 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGA 3026 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || |||||||||| ||| || || | || Sbjct 3025 TAAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCT 2966 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || || || |||| |||||||| || || || || ||||| |||| Sbjct 2965 CGATAGTGTCGGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAA 2906 Query 42199 AGATTTGCATTTTC 42212 | || ||||||||| Sbjct 2905 AAATCTGCATTTTC 2892 >seq82192 Length=1419 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||| |||||| | | | |||||||||| ||||||||||||||||||||| || Sbjct 402 TGAAAAAAATTCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 343 Query 57056 ACTCACCACTATACTACCGAGGATT 57080 |||||||||||||||| | ||||| Sbjct 342 ACTCACCACTATACTAACACGGATT 318 >seq147940 Length=5469 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 56998 AAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||||| | | | |||||||||| |||| |||||||||||||||| |||| Sbjct 4826 AAAAATATTTCTCCGTGTCGGGGAATCGAACCCCGGTCGCCCGCGTGACAGGCGGGCATA 4885 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || |||||||||||| | ||||| Sbjct 4886 CTAACCACTATACTAACACGGATT 4909 >seq142975 Length=10079 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 8059 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 8000 Query 57080 TG 57081 || Sbjct 7999 TG 7998 >seq39877 Length=3223 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56999 AAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| | | | |||||||||| ||||||||||||||||||||| |||| Sbjct 1910 AAAATATTTCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1851 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||||| | |||| Sbjct 1850 TCACCACTATACTAACACGGAT 1829 >seq35616 Length=3306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 2307 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 2248 Query 57080 T 57080 | Sbjct 2247 T 2247 >seq192152 Length=1635 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 615 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541770800881440