Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq23123 89.7 5e-13 seq208936 82.4 8e-11 >seq23123 Length=2086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| |||| ||| ||||| ||||||||||||| || || ||||| || ||||||| Sbjct 706 ACGGAGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCGACTGCGTCCACCGCACAGATCC 647 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGTGCTC 95196 | || ||||||||||| |||| ||| ||| |||| | ||| ||| || ||||||| Sbjct 646 TGGGTAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTAC-ACACGCAGGGTGCTG 588 Query 95197 GCCGGGGAATTCC 95209 | ||||| |||| Sbjct 587 TCTGGGGAGTTCC 575 >seq208936 Length=1094 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 ||||| ||||||||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 96 CTGCTGCTGGCCCCCATGCCGACTGCGTCCACGGCTCAAATCCTCGGCAACAACGAGTCC 37 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACA 95182 |||| ||| |||| |||| | |||| Sbjct 36 ATCGAGGCCTACACCAGCAACATCTACA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493409920161360