Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq184351 114 1e-20 seq114 91.5 1e-13 >seq184351 Length=2863 Score = 114 bits (126), Expect = 1e-20 Identities = 193/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 52238 CGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCTG-ATAAAAGATGAGCACGAGC 52296 ||||||| |||||||||||| ||||| ||||| ||||| || || | ||||| Sbjct 2443 CGTGCACTCGGAGATGTACAGCCTGCTGATTGA-CAGCTACATCCGCGACCCGGCCGAGC 2385 Query 52297 GCGACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGG 52356 | | | |||| | | || | ||| | |||||||||| || ||||| | |||| Sbjct 2384 GACAGATGCTGTTCCACGCCGTGGAGACCATGCCGTGCGTGCGGCGCAAGGCGGACTGGG 2325 Query 52357 CAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCA 52416 | || ||||||||| ||| | | | ||| | | |||||| | ||||||||||| Sbjct 2324 CGCTGCAGTGGATCGCCAGCAAGGACACGACGTTCGGCGAGCGGCTTGTGGCCTTCGCTG 2265 Query 52417 TAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAG 52476 || |||||||||||||| || ||| ||||| |||||||| | | |||| | | Sbjct 2264 CGGTGGAGGGCGTGTTTTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTGAAAAAGCGCG 2205 Query 52477 GCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGAT 52513 | | | ||||||||||||||| |||||| |||| Sbjct 2204 GGCTGCTCCCCGGCCTGACGTTCTCTAACGAGCTGAT 2168 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 52644 ACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGAGTACAT 52702 ||||| ||||||||||||| || | ||||||||| ||| || ||| | |||||| Sbjct 2105 ACGGCGGCGCTGCCGGTCGCCATGATCGGCATGAACTGCGACCTC-ATGAAGGCGTACAT 2047 Query 52703 CGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG 52762 |||||| |||||||| || ||| ||| |||| | || ||| | |||| Sbjct 2046 CGAGTTCGTGGCGGACCGGCTGCTGGCCGAGCTGCGATGCCCGAAGGTTTATAACGTGGA 1987 Query 52763 CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 || || || || || ||| | ||||| ||||| |||||||| | ||||| |||||||| Sbjct 1986 AAACCCCTTCGACTTCATGGAGAACATCTCGCTGCAGGGCAAGGCAAACTTCTTCGAGAA 1927 Query 52823 GCGAGTCG 52830 | |||||| Sbjct 1926 GAGAGTCG 1919 >seq114 Length=3964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || || || ||||| || || || |||| ||| Sbjct 3085 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGA 3026 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | |||||||| ||||| || || || || || ||||| ||| || || | | | Sbjct 3025 TAAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCT 2966 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | ||||||| || ||| ||||||| || | || ||||| ||||| || || |||| Sbjct 2965 CGATAGTGTCGGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAA 2906 Query 138605 AAATCTGCAT 138614 |||||||||| Sbjct 2905 AAATCTGCAT 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494945034239520