Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq114 109 5e-19 seq195337 89.7 5e-13 seq90790 87.8 2e-12 >seq114 Length=3964 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || |||||| ||| || ||||| || || ||| |||| Sbjct 3083 TTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATA 3024 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| ||| ||| | | ||| Sbjct 3023 AGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCG 2964 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| |||| ||| | || || |||||||| || || |||||| Sbjct 2963 ATAGTGTCGGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAA 2904 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 2903 ATCTGCAT 2896 >seq195337 Length=3657 Score = 89.7 bits (98), Expect = 5e-13 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT- 146738 |||| ||||||||||| |||||||||||| ||||||||| | |||| |||| ||||| Sbjct 2737 TACTCCACAATCTCGGTGCAGAGGTTGCTACACTTGATGGTCCCCAGGTTTTGCTGGTTG 2796 Query 146739 -ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||| ||||||||| | |||||||| |||||||| || Sbjct 2797 GACT--TCTTGTTGCACGCATCCTTGTACAGCATGTAGGG 2834 >seq90790 Length=3890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 126992 TGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTG 127051 ||||| || || || |||||||||||||| ||| || ||||| | ||||| |||| Sbjct 1046 TGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTG 1105 Query 127052 TCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 || | | |||||| || | ||| | || || |||||||| ||||| ||||| |||||| Sbjct 1106 TCTGAAGGCTCGACCTCAAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACAAAGATCTGC 1165 Query 127112 ATG 127114 ||| Sbjct 1166 ATG 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474238547463840