Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq195337 122 1e-22 seq184351 89.7 8e-13 >seq195337 Length=3657 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | | ||| | ||| || ||||| |||||||| Sbjct 394 CTTCCATCCGTAGAAGTGCATGCTTGTGATTTTCCCGTAGTTCGGCTCGGCGATGTGAAT 453 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 |||||| |||||||||||||||||| ||||| || || || || ||||| ||||| | || Sbjct 454 GTTCAGCGACTGGCTTTGGTCGATG-AAGGCACCGCGGTCGGCCGCCATCTTGATCACGG 512 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||||||||||||||||| || |||||| Sbjct 513 TTTTCTGCGAAATCTCCCAGACGGTCTTG 541 >seq184351 Length=2863 Score = 89.7 bits (98), Expect = 8e-13 Identities = 235/352 (67%), Gaps = 20/352 (6%) Strand=Plus/Plus Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||| | |||||| || | | ||||| || | | ||| ||| || Sbjct 2154 CCTCGTCTCGGCTGATCAGCTCGTTAGAGAACGTCAGGCCGGGGAGCAGCCCGCGCTTTT 2213 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| || ||||||||||| | || ||||| | |||||||| || || || | Sbjct 2214 TCAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAAAACACGCCCTCCACCGCAGCGAAGG 2273 Query 160065 CCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 |||| |||| ||| || || | | | ||| || | | ||||| ||||| | Sbjct 2274 CCACAAGCCGCTCGCCGAACGTCGTGTCCTTGCTGGC---GATCCACTGCAGCGCCCAGT 2330 Query 160122 CAGCCTT-CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA--ATCTGTCCTGCT 160178 | ||||| | || | |||||||||| ||| ||||||| |||| ||||||| ||| Sbjct 2331 CCGCCTTGCGCCGC-ACGCACGGCATGGTCTCCACGGCGTGGAACAGCATCTGTC--GCT 2387 Query 160179 CCTTCACATCCTTGATCAGAGTAG----CAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234 | | || ||| |||| |||||||| |||||| || | |||||| Sbjct 2388 CGGCCGGGTCGCGGAT----GTAGCTGTCAATCAGCAGGCTGTACATCTCCGAGTGCACG 2443 Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCA 160286 ||||| ||||| ||||| || |||||| | ||||||| || ||||| Sbjct 2444 TTTTCCATGGCGATCTGGAAACCATAGAAACAGCGCGCCTCCGGAACCTGCA 2495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793044400884960