Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq184351 192 6e-44 seq114 113 4e-20 seq142262 102 8e-17 seq178124 89.7 5e-13 >seq184351 Length=2863 Score = 192 bits (212), Expect = 6e-44 Identities = 250/344 (73%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | || || ||||| ||| |||| |||||| | || ||||| |||| Sbjct 2154 CCTCGTCTCGGCTGATCAGCTCGTTAGAGAACGTCAGGCCGGGGAGCAGCCCGCGCTTTT 2213 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||| || || |||||| || || |||||||| || || ||||| | Sbjct 2214 TCAGCCAGAAGATGGCCGCAAACGAGCCCGAGAAAAACACGCCCTCCACCGCAGCGAAGG 2273 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||| || |||||||||||||| | || |||||||||||||| |||||||||| || | Sbjct 2274 CCACAAGCCGCTCGCCGAACGTCGTGTCCTTGCTGGCGATCCACTGCAGCGCCCAGTCCG 2333 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| ||||||||||| || || | ||||| |||| || ||| ||| Sbjct 2334 CCTTGCGCCGCACGCACGGCATGGTCTCCACGGCGTGGAACAGCATCTGTCGCTCGGCCG 2393 Query 133157 AGGAACGCACGTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 | || | |||| |||| || || || | ||||| |||||||| ||||| ||||| Sbjct 2394 GGTCGCGGATGTAGCTGTCAATCAGCAGGCTG--TACATCTCCGAGTGCACGTTTTCCAT 2451 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 |||||| || || || || || || |||||||| ||||||| Sbjct 2452 GGCGATCTGGAAACCATAGAAACAGCGCGCCTCCGGAACCTGCA 2495 >seq114 Length=3964 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || || || ||||||||| |||| |||||| | Sbjct 2893 AAAATGCAGATTTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCG 2952 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 |||||| | | | | || | || |||| ||||| ||||| || |||||| || Sbjct 2953 TCCGACACTATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGA 3011 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 3012 CCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTA 3071 Query 38420 CAACATCCAAAAGG 38433 ||||||||| |||| Sbjct 3072 CAACATCCAGAAGG 3085 >seq142262 Length=5470 Score = 102 bits (112), Expect = 8e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||| ||||| || || || |||||| |||| Sbjct 1 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCCGCGAAGAAAGCGAGAACGTGCGAGATG 60 Query 133339 AAATGGCGCTCGTTGTCG--TTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCA 133396 || | |||||| | || |||| | |||||| ||| ||||| || |||| Sbjct 61 AACCGCCGCTCG--GCCGGCTTCAGTGACAACCAGTCCGCCGTATCCTTCCCAAGATCCA 118 Query 133397 CCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAAT 133456 |||| || | ||| || || || | || || |||||||| | ||||||||| | Sbjct 119 CCTCTTCTGCACACCAGAAGGAGGCTTGCGCCTTCTTGTACATGCCCCACATGTCGTGGT 178 Query 133457 ATTGTATGGGAAAAATCACAAACC 133480 | | |||||||| | ||||||| Sbjct 179 ACCGGATGGGAAACACTACAAACC 202 >seq178124 Length=5838 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||||||||| | | |||||||| || || | | |||||||| || || ||| Sbjct 2311 TAGGTGTCGATCAAGAGACTGTACATTTCAGATTGAATATCTTCCATGGCAATCTGGAAG 2370 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || ||||||| |||||| ||||||| | ||||| ||| | ||| ||||||||| Sbjct 2371 CCATAGAAGCACCTGGCCTCGGCCACCTGGATCTCTTGGCTGAATCTCTCCACCAGATTT 2430 Query 133288 TCGTTGACGATGCCGTC 133304 || |||||||| || || Sbjct 2431 TCATTGACGATACCATC 2447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498845053789440