Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq150367 174 2e-38 seq118491 111 2e-19 >seq150367 Length=3699 Score = 174 bits (192), Expect = 2e-38 Identities = 396/595 (67%), Gaps = 37/595 (6%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 ||||||| ||| ||||| ||||| ||||| ||||| || ||||| |||| |||||| || Sbjct 1839 AACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGTTCATTGGAG 1898 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || | || ||||| | ||| | ||||| | ||| | ||| ||||| || || Sbjct 1899 AACGTCAGCCC-GGCATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCAAAGGAGCCC 1957 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || || || || |||| || || ||| ||||| | || || Sbjct 1958 GAGAAAAAGATGTCTTCCACCGCATTAAAGGCAACCACGCTG----------------CA 2001 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | |||||| | || ||||| ||||||||||| ||| |||| ||| | ||||| Sbjct 2002 TTGTCTCCGATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCA 2061 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 | | ||| || || | | ||| | || ||| || | | | || ||||| | | Sbjct 2062 TTCGCATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATCAAGAGA 2121 Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||||||||||| || ||||||||||| || || || || || || || || || || || Sbjct 2122 CTGTACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGGCC 2181 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAAC-----TATTC 19366 || || | || || || | ||||| || |||| ||| ||||| || | || Sbjct 2182 TCGGTCACCTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTTGTC 2241 Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG---TTTTTCAT--CTGA 19421 |||| ||||| ||||| ||||| | || ||||| || || || ||| |||| || | Sbjct 2242 CATCGCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCACTCA 2301 Query 19422 GGTT---AATGTATTCCAA-TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCC 19477 | || ||| |||| || ||||| || | |||||||| |||||||||| Sbjct 2302 GCTTCTCCCAGTAGGCCAAGTC------CTCTTTCGAGAGGTCTACTTCCTCAACTGTCC 2355 Query 19478 AAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532 | || || |||| | ||| || ||||| |||||| || || || |||||| Sbjct 2356 AGAATGATGCCTAGGTTTTCTTCTACATCCGCCATATGTCGCGGTACCATATAGG 2410 >seq118491 Length=654 Score = 111 bits (122), Expect = 2e-19 Identities = 281/425 (66%), Gaps = 2/425 (0%) Strand=Plus/Plus Query 48388 TGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATAT 48447 |||| | |||| ||||| |||| || ||||| || || |||||||| |||||||| Sbjct 1 TGTTGAACACTCGCAACATGGGGAGAAGGCCATTAGAGATTCCATTGGTCCCCGAAATTA 60 Query 48448 AACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 ||||| | || || || || || | || || || || || || || | Sbjct 61 CGCTTCCTGTGGCCCTGATCTTGTGGATGTTGACCCCGATCCCCCCAGCGGACTTGGAGA 120 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 |||| |||||| |||| || || ||| | || || || ||||| || ||| ||||| | | Sbjct 121 TTAGTGCACACTGTTTCAGCGTTTCAAATATACCGTCCATACTGTCCTCTTTCATAGTCA 180 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 | ||||| || | | ||| | | || || | |||||| | || || | | Sbjct 181 GCAAGAAACAGCTCGCAAGTTGAGCCTTGTTGGTACCAGCATTAAAGAGGGTCGGTGTGG 240 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-C 48686 |||| |||||||||||||| || | | || || ||||||||| | | |||| ||| Sbjct 241 CATGTATAAACCATTTCTCCGACATAAGGTTGTAGGTTTCAATAGCGGCGTCTAAATCTT 300 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 || | || || || | | ||| | ||| ||||| | ||| || | ||||| | ||| Sbjct 301 CAAAG-TGAATTCCGAGGGCTACCCTCATCAACATGTGTTGTGGGCGCTCAACTACTTTC 359 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806 || |||||| | || || || | || | ||||| | ||||| || |||| | | Sbjct 360 CCATCTATTTTGAGTAGGTACGACCTCTCTAGGGTTTTGATGCCAAAGTACGTGTACGTA 419 Query 48807 AAGTC 48811 ||||| Sbjct 420 AAGTC 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560616640032240