Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq118554 275 5e-69 seq46062 138 9e-28 seq82958 132 4e-26 >seq118554 Length=928 Score = 275 bits (304), Expect = 5e-69 Identities = 468/674 (69%), Gaps = 6/674 (1%) Strand=Plus/Plus Query 29722 TTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGC 29781 ||||||||||| | | | ||| | | || || | || ||||| ||||| | ||| Sbjct 221 TTAAAGTCGTCGATGGCTTTCACGCGGCAATTGATATTGAGAGTGGGGAAGGGCCGCGGC 280 Query 29782 TCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCC 29841 |||||| | || || || | || ||||||| || || ||||||||||||||| Sbjct 281 TCCCTCCTCAATTGTTCATTAAGAGCATCGACGTGATTGAGATAAACGTGAGCGTCTCCC 340 Query 29842 AGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGG 29901 ||| | || ||||| ||||| || | || || |||||||| || |||||||| || || Sbjct 341 AGGCTATGAACAAAGTCTCCAGGCTTTAATCCTGTGACGTGGGCTATCATGTAGGTCAGC 400 Query 29902 AGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAG 29961 ||| ||||| || || || || || || ||||||||||||||||| || | |||||| Sbjct 401 AGACTATAGCTAGCAATATTGAAAGGAACGCCGAGCCCCATGTCCCCGGAGCGCTGGTAC 460 Query 29962 AGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT-GACACATGGTGTGGCACGGAGG 30020 || || || |||||||| |||| | |||||||||| |||| | | || || || || Sbjct 461 AGATGGCAGGAGAGCTCGCCGTTACAAACGTAAAACTGGACA-AAAGCATGACAGGGGGG 519 Query 30021 AAGAGCCA--TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 || | || | ||| || ||| |||||||| ||| ||| ||| || | |||| Sbjct 520 TAGCGTCATCTTAGG--CAGATCTGGTGGGTTCCATGCGGACATGATAATCCTCCTGCTA 577 Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138 || |||| ||| | | | | | | | | || ||| ||||| ||| ||||| | Sbjct 578 TCAGGGTCATTCTTTACGGTTTGGATGACTTGGGCCAACTGGTCCACACCCTGCCCCGTG 637 Query 30139 TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30198 || || | | | ||| | || ||||| || || |||||||| || || || || || Sbjct 638 TAATCCGTATGCCTATCCTTATATTCTGCACCAAAGTGCCTCCATTGAAAGCCATAGACA 697 Query 30199 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 || |||| ||||||| | || ||| | | || | | ||||||||||||||| ||| Sbjct 698 GGACCCAAGTCTCCCACCTCATAGTGATTTAGTCCGCGCCTGTCCAAAAAGTCTCGTGAA 757 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 | |||||||||||| || | ||| || ||||| || || |||| ||| || | || Sbjct 758 CAGTTGGCGTCCCATATGTGCACCTTTTTATCGGACAGATCCTTGGCGTTCGTACAGCCC 817 Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30378 | || | ||||| ||||| || || || ||||||| || || | ||| || || || Sbjct 818 CGAACAAGCCACAAAAGCTCTTCGACAACCCCCTTCCAGAATACACGCTTCGTGGTCAGC 877 Query 30379 AGGGGAAACTGTCC 30392 | ||||||||||| Sbjct 878 AAAGGAAACTGTCC 891 >seq46062 Length=4436 Score = 138 bits (152), Expect = 9e-28 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| |||||||||||||||||||||||||| ||||| Sbjct 429 AGTCCAGTGATGTGGGCTATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGA 488 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||| |||| || || | |||||| |||||||| || ||||| |||| | | Sbjct 489 ACGCCAAGGCCCGTGTCTCCAGAGCGCTGGTACAGCTGACATGACAGCTCACCGTTACAC 548 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| ||||| | || ||| || ||||| || ||||| Sbjct 549 ACGTAGAACTGGACGAAGGCGTGACAGGGAGGCAGCGCCAT 589 >seq82958 Length=1740 Score = 132 bits (146), Expect = 4e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 30154 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30213 ||| ||||||| || || || |||||||||||||| |||||||| || |||||||| ||| Sbjct 900 TCCTTGTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACAGGGCCCAGGTCCCCC 959 Query 30214 TCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30272 || || || ||| | || | |||||||| ||||||| ||||||||||| ||||| Sbjct 960 TCCTCATAATGGCTC-AGTCCACGCTTGTCCAGGAAGTCTCGTGAACCGTTGGCATCCCA 1018 Query 30273 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30332 ||| | ||| || ||||| || || ||| || || | || | |||||||||| Sbjct 1019 GATGTGCACCTTTTTGTCGGAAAGTTCCTTGCCGTCCGTACAGCCGCGAACGAACCACAA 1078 Query 30333 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30392 |||||||| |||| | |||| || || | || || || || | |||||||| || Sbjct 1079 GAGCTCCTCAGCGACCCCTCTCCAGAACACACGTTTTGTAGTCAGCAAAGGAAACTGCCC 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407560011586118