Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq184351 87.8 2e-12 seq114 87.8 2e-12 >seq184351 Length=2863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 46670 CGTACACACTGAGATGTATAGTCTGCTCATAGAACAATTGATTAGAGACGAGCACGAGCG 46729 ||| ||| | |||||||| || ||||| || || | || | ||| | |||||| Sbjct 2443 CGTGCACTCGGAGATGTACAGCCTGCTGATTGACAGCTACATCCGCGACCCGGCCGAGCG 2384 Query 46730 CGACACGTTGCTGAATGCGTTCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGC 46789 | | | || | | || | ||| | |||| ||||| || ||||| | ||||| Sbjct 2383 ACAGATGCTGTTCCACGCCGTGGAGACCATGCCGTGCGTGCGGCGCAAGGCGGACTGGGC 2324 Query 46790 CATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGAT 46849 || ||||||||| ||| || | | ||| | | |||||| | ||||| ||||| Sbjct 2323 GCTGCAGTGGATCGCCAGCAAGGACACGACGTTCGGCGAGCGGCTTGTGGCCTTCGCTGC 2264 Query 46850 AGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGG 46909 || || ||||||||||| |||||| ||||| ||||| || | | |||| || Sbjct 2263 GGTGGAGGGCGTGTTTTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTGAAAAAGCGCGG 2204 Query 46910 CATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGA 46957 | | || |||||||||||| ||||||| ||||| || ||||| Sbjct 2203 GCTGCTCCCCGGCCTGACGTTCTCTAACGAGCTGATCAGCCGAGACGA 2156 >seq114 Length=3964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || || ||||||||||| || ||| || ||| || ||||| || |||| |||| Sbjct 3083 TTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATA 3024 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || ||||| || ||||| || || || || || |||| | || Sbjct 3023 AGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCG 2964 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | ||| |||| |||||| || |||| || | || ||||| ||||| || || | ||| Sbjct 2963 ATAGTGTCGGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAA 2904 Query 132116 ATCTGCAT 132123 |||||||| Sbjct 2903 ATCTGCAT 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475345999823760