Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq150367 205 1e-47 seq118491 131 2e-25 seq195337 86.0 9e-12 seq80537 86.0 9e-12 >seq150367 Length=3699 Score = 205 bits (226), Expect = 1e-47 Identities = 579/879 (66%), Gaps = 38/879 (4%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGT-TTCTCGAAAAAATTAGTTTTGCC 39369 ||||| |||||||| || ||||| || || || | |||||||| || || | || || Sbjct 1548 GACATCACTCCCATCTTCTGGTACTCTCCTG-GCTTCTTCTCGAAGAAGTTGGCCTTCCC 1606 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 |||| || || || |||||||| ||||| ||||| |||| || | || | | Sbjct 1607 CTCCAGGGAGATGTTCTCCATGAAGTCAAAAGGATT-GTTG-----TAGATCTTACTGCA 1660 Query 39430 TCCTAATTCTGAAATCAAT---CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 | | ||| | |||| | |||| ||||| | || || |||| ||| || Sbjct 1661 CTCGAGTTC---ACCCAATAGCCGGCCTGCTACAAACACGATATACTGTTTCCTCAGGTC 1717 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 | ||||| || || || || | || ||||||||||| || ||||| | | || | Sbjct 1718 ATTTTTCATACCAATCAGCTTCAGGGGAAGAGCCTCCGTCAGGAACTCCTGAGCAATCTT 1777 Query 39547 TACGGCCTCTGTT-ATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTT 39605 ||||| | ||| || ||| | ||| ||||| || | | |||||| Sbjct 1778 CACGGCAT-TGTCGATGATCTCGTGGATGGGCTCCTCACTAGGCTTGTTAACCAAATGTC 1836 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 ||||| | ||||| |||||||| |||||||||||||| ||||| || | ||| || | Sbjct 1837 CGAACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGTTCATTGG 1896 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 | || || || || ||||||| || |||||| ||||||| | || ||||| || | Sbjct 1897 AGAACGTCAG-CCCGGCATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCAAAGGAGC 1955 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785 | || || |||||| |||| || || ||| ||||| | | || | |||| | Sbjct 1956 CCGAGAAAAAGATGTCTTCCACCGCATTAAAGGCAAC----CACGCTGC----ATTGTCT 2007 Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | ||||| | | ||||| ||||| ||||||||| |||| ||| | || || Sbjct 2008 C-----CGATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCAT 2062 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | ||||| ||||| | | || || | ||| || | | || || || || |||| Sbjct 2063 TCGCATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATCAAGAGAC 2122 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 | |||||||| || || || ||||| || || || || || || || || || || || | Sbjct 2123 TGTACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGGCCT 2182 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCAC-----TATTCC 40020 | || | | |||||| | ||||| ||| ||| ||| ||||| || | ||| Sbjct 2183 CGGTCACCTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTTGTCC 2242 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA 40080 ||| ||||| ||||| ||||||| || ||||| || || | | ||| || ||| Sbjct 2243 ATCGCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCACTCAG 2302 Query 40081 TTTATTCCAGT---CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGA 40137 || | ||||| | | ||||| || | |||||||| ||| ||||||| || || Sbjct 2303 CTTCTCCCAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCCAGAATGA 2362 Query 40138 CGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATA 40176 |||| | || || ||||| |||||| || || || Sbjct 2363 TGCCTAGGTTTTCTTCTACATCCGCCATATGTCGCGGTA 2401 >seq118491 Length=654 Score = 131 bits (144), Expect = 2e-25 Identities = 286/426 (67%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 |||| || ||| || | || |||||||| | ||||| || || ||||| |||||| Sbjct 9 ACTCGCAACATGGGGAGAAGGCCATTAGAGATTCCATTGGTCCCCGAAATTACGCTTCCT 68 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || | || || || | || || || || || || |||||||| ||| Sbjct 69 GTGGCCCTGATCTTGTGGATGTTGACCCCGATCCCCCCAGCGGACTTGGAGATTAGTGCA 128 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || |||||| || ||| ||||||| || || || || ||| |||| | || | ||| Sbjct 129 CACTGTTTCAGCGTTTCAAATATACCGTCCATACTGTCCTCTTTCATAGTCAGCAAGAAA 188 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 ||||| | | |||| | | || || |||||||| | || || | || || | Sbjct 189 CAGCTCGCAAGTTGAGCCTTGTTGGTACCAGCATTAAAGAGGGTCGGTGTGGCATGTATA 248 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATG 70085 |||||||| || || | || ||||| ||||||||||| | |||| ||| || | || Sbjct 249 AACCATTTCTCCGACATAAGGTTGTAGGTTTCAATAGCGGCGTCTAAATCTTCAAAG-TG 307 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 |||||| | || || | ||||||||| || || || || || || ||| || ||| Sbjct 308 AATTCCGAGGGCTACCCTCATCAACATGTGTTGTGGGCGCTCAACTACTTTCCCATCTAT 367 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||| | ||||| || | || || ||||| | ||||| || |||| | |||||| | Sbjct 368 TTTGAGTAGGTACGACCTCTCTAGGGTTTTGATGCCAAAGTACGTGTACGTAAAGTCACG 427 Query 70206 TTCGTA 70211 ||||| Sbjct 428 GTCGTA 433 >seq195337 Length=3657 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||||||||||| ||||| ||||| | ||| || | || ||||| || ||||| | Sbjct 396 TCCATCCGTAGAAGTGCATGCTTGTGATTTTCCCGTAGTTCGGCTCGGCGATGTGAATGT 455 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || ||||| |||||||| || || | || |||||||| || || | | | Sbjct 456 TCAGCGACTGGCTTTGGTCGATGAAGGCACCGCGGTCGGCCGCCATCTTGATCACGGTTT 515 Query 68561 TTTGAGGAATTTCCCAAATAGTCTT 68585 | || | ||| ||||| | ||||| Sbjct 516 TCTGCGAAATCTCCCAGACGGTCTT 540 >seq80537 Length=9825 Score = 86.0 bits (94), Expect = 9e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 163054 ATATACGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAAAGACTACTT-GAACAATGG 163112 || ||||| || |||||||| ||||| || | || || ||||| || ||||| || Sbjct 1733 ATCTACGAACCTGGAAAACGACATTGGCTCAAGGTCAAAAAGGACTATTTAGAACAG-GG 1791 Query 163113 TTCAATGGCAGACTCTGCAGATTTAGTAGTACTTGGGGCATATTATGGAAAAGGAATAAA 163172 | ||||||||||| | ||||| || ||||| || ||||| | ||| || | ||||| || Sbjct 1792 TGCAATGGCAGACACAGCAGACTTGGTAGTGCTGGGGGCGTTTTACGGCACAGGAAATAA 1851 Query 163173 GGGTGGAATGATGGCTGTCTTTTTGATGGGTTGCTATGATGACGAGTCTGGTAAATGGAA 163232 || || ||||| | || || | |||||| |||||| || |||| || ||| Sbjct 1852 AGGAGGGTTGATGTCAGTGTTCCTTATGGGTGTGTATGATCCTGACACTGGCAAGTGGTG 1911 Query 163233 GACAGTAACTAAATGT 163248 || || || || ||| Sbjct 1912 CACTGTGACCAAGTGT 1927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685085349072240