Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq118554 118 8e-22 seq150367 104 2e-17 seq93348 87.8 1e-12 seq46062 84.2 2e-11 >seq118554 Length=928 Score = 118 bits (130), Expect = 8e-22 Identities = 391/603 (65%), Gaps = 4/603 (1%) Strand=Plus/Minus Query 40689 CAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTA 40748 |||||||| ||||| || || || | || ||||| || ||| ||||| || || Sbjct 888 CAGTTTCCTTTGCTGACCACGAAGCGTGTATTCTGGAAGGGGGTTGTCGAAGAGCTTTTG 829 Query 40749 TGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGG 40808 ||| || | || ||||| || || ||| | | || || | | |||||||| ||| Sbjct 828 TGGCTTGTTCGGGGCTGTACGAACGCCAAGGATCTGTCCGATAAAAAGGTGCACATATGG 769 Query 40809 AATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868 | || || |||| | | |||| || ||| || | | || | || Sbjct 768 GACGCCAACTGTTCACGAGACTTTTTGGACAGGCGCGGACTAAATCACTATGAGGTGGGA 709 Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 || | |||||||| ||||| ||||| | | | || ||||| ||| ||||| | || | Sbjct 708 GACTTGGGTCCTGTCTATGGCTTTCAATGGAGGCACTTTGGTGCAGAATATAAGGATAGG 649 Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAA 40988 | | ||||| || | || |||| || || || || | || | || Sbjct 648 CATACGGATTACACGGGGCAGGGTGTGGACCAGTTGGCCCAAGTCATCCAAACCGTAAAG 589 Query 40989 TCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTG 41048 || || |||||| | | || || ||| ||| ||||||||| | || | | | | Sbjct 588 AATGACCCTGATAGCAGGAGGATTATCATGTCCGCATGGAACCCACCAGATCTGCCTAAG 529 Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTC-AGTTTTACGTTTGCAATGGTGAACTGTC 41107 ||| | | || || |||||| || |||| ||||||||||||| || || || || || Sbjct 528 ATGACGCTACCCCCCTGTCATGCTTT-TGTCCAGTTTTACGTTTGTAACGGCGAGCTCTC 470 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || || |||| || | || || |||||||| || || || || || || || || || Sbjct 469 CTGCCATCTGTACCAGCGCTCCGGGGACATGGGGCTCGGCGTTCCTTTCAATATTGCTAG 410 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 ||| |||||| || || ||||| || ||||| || ||||| ||||| || ||||| Sbjct 409 CTATAGTCTGCTGACCTACATGATAGCCCACGTCACAGGATTAAAGCCTGGAGACTTTGT 350 Query 41228 TCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA-GCCGTTAACAGAACAAC 41286 ||| | | ||||| | || |||| | |||||| | || || |||| |||||| Sbjct 349 TCATAGCCTGGGAGACGCTCACGTTTATCTCAATCACGTCGATGCTCTTAA-TGAACAAT 291 Query 41287 TGA 41289 ||| Sbjct 290 TGA 288 >seq150367 Length=3699 Score = 104 bits (114), Expect = 2e-17 Identities = 232/343 (68%), Gaps = 18/343 (5%) Strand=Plus/Minus Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 || || || || || ||||||||||| ||||||||||| || |||||||||||||| || Sbjct 2174 TGCTTCTAGGGCTTCCAAATTGCCATGGAAAATATTCACTCTGAAATGTACAGTCTCTTG 2115 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AAC 44058 || || || | |||||| ||| || |||||| | | | || ||||||| || | | Sbjct 2114 ATCGACACCTTCATCAAGGATCCACAGGAGAAGGAGCACCTCTTCAATGCGAATGAGACC 2055 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-AAATTCAAATGATT 44117 | | || | || | || || || ||||| |||| |||||| | ||| Sbjct 2054 ACGCCGTGTG-CAAAGAAGAAGGCTGAATGGGCTCTTAGATGGATCGGAGACAA------ 2002 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 || || || | || || ||| | ||||||| ||| || || || || || | Sbjct 2001 ----TGCAG--CG--TGGTTGCCTTTAATGCGGTGGAAGACATCTTTTTCTCGGGCTCCT 1950 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| || | ||||| | || || ||| | ||||| ||| ||||||| || |||| Sbjct 1949 TTGCAGCTAACATTTGGCTGAAAAAGATAGGGATAATGCC-GGGCTGACGTTCTCCAATG 1891 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 | | || ||| | ||||| ||| |||| || || ||||| || Sbjct 1890 AACTGATCAGTAGGGATGAGGGCCTACACTGTGACTTTGCCTG 1848 >seq93348 Length=6301 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 || || ||||| || || |||||||| ||||||||||| || ||||||||||||||| || Sbjct 5197 TGCTTCTATGGCTTCCAGATTGCCATGGAAAATATTCAATCTGAAATGTACAGTCTTTTG 5138 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055 || || || || ||||| ||| || ||||| | | | || |||||||| || Sbjct 5137 ATCGACACCTATATCAAGGATCCACAGAAGAAGGAGCACCTCTTCAATGCGATTGA 5082 >seq46062 Length=4436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || ||||| || ||||| ||||| || || ||||| ||||| Sbjct 590 GATGGCGCTGCCTCCCTGTCACGCCTTCGTCCAGTTCTACGTGTGTAACGGTGAGCTGTC 531 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 |||||| |||| || | || || |||| ||| || || || || || ||||| || || Sbjct 530 ATGTCAGCTGTACCAGCGCTCTGGAGACACGGGCCTTGGCGTTCCCTTCAACATCGCCAG 471 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACAC 41198 || |||| ||||| || ||||| || ||| Sbjct 470 CTACTCTCTCCTCACCTACATGATAGCCCAC 440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396427300157830