Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq88155 109 7e-19 seq195337 105 8e-18 seq118491 84.2 3e-11 >seq88155 Length=6096 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | ||| ||||| || | ||| || ||| || ||||||| |||| ||| Sbjct 1463 GTGTACTCGACAATCTCTGTGCAGAGGTTACTACACTTGATGGTCCCCAGGTTCTGCTGG 1404 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||||||||||||||||||||| ||||||||||| | |||||||| ||||| Sbjct 1403 TTCGACTTCTTGTTGCACGCATCCTTGTACAGCATGTAGGGGTTTCCCGTCTCTGTCTGG 1344 Query 111398 GATTTGAGAATAGCCTTCCAAAC 111420 | | || ||||| | ||| || Sbjct 1343 GCCTCGATGATAGCGTACCAGAC 1321 >seq195337 Length=3657 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | ||| || || || | |||| || ||| || ||||||| || | ||| Sbjct 2734 GTGTACTCCACAATCTCGGTGCAGAGGTTGCTACACTTGATGGTCCCCAGGTTTTGCTGG 2793 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||||||||||||||||||||| ||||||||||| | || ||||||||||| Sbjct 2794 TTGGACTTCTTGTTGCACGCATCCTTGTACAGCATGTAGGGGTTTCCGGTCTCCGTCTGA 2853 Query 111398 GATTTGAGAATAGCCTTCCAAAC 111420 | | || ||||| | ||| || Sbjct 2854 GCCTCGATGATAGCGTACCAGAC 2876 >seq118491 Length=654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 221/330 (67%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 ||||||| | ||| || |||||||| |||| |||||| | ||||||| | || ||| Sbjct 84 TGGATGTTGACCCCGATCCCCCCAGCGGACTTGGAGATTAGTGCACACTGTTTCAGCGTT 143 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 || | ||||||| || |||||| || | | | | ||| || || | | || Sbjct 144 TCAAATATACCGTCCATACTGTCCTCTTTCATAGTCAGCAAGAAACAGCTCGCAAGTTGA 203 Query 111944 GGTCTTGGTG-TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGG 112001 | |||| || |||||||||| |||||||| ||||| || || || || ||| | | | Sbjct 204 GC-CTTGTTGGTACCAGCATTAAAGAGGGTCGGTGTGGCATGTATAAACCATTTC-TCCG 261 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || ||| || || | | | || | ||||| ||| || |||| || | Sbjct 262 ACATAAGGTTGTAGGTTTCAATAGCGGCGTCTAAATCTTCAAAGTGAATTCCGAGGGCTA 321 Query 112062 CCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATA 112119 ||| ||| ||||||| |||||| || | | | ||||| | |||| || || Sbjct 322 CCCTCATCAACATGTGTTGTGGGCGCTCAACTACTTTCCCATCTA--TTTTGAGTAGGTA 379 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||| |||||||||| |||||||| Sbjct 380 CGACCTCTCTAGGGTTTTGATGCCAAAGTA 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626364841953600