Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq88155 100 3e-16 seq195337 91.5 2e-13 seq118491 89.7 6e-13 seq38558 87.8 2e-12 seq23123 84.2 2e-11 >seq88155 Length=6096 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 |||||||| ||||||||||| |||||||| ||| || | || ||||| || ||| | Sbjct 101 TTCGCCATGTACCTCGAGCCCTGGCACGCTGACATCTTCGAGTTCCTTGACGCCCGCAAG 160 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||| ||| | || ||| ||| ||| ||||| || ||| |||||||||||||| Sbjct 161 AACACGGGCAAAGAAGAGCAGCGTGCTCGGGACCTGTTTTACGCCATGTGGATTCCGGAC 220 Query 19613 CTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGC 19672 || |||||| || ||| ||| || | | || ||| || ||||| ||||| || ||| Sbjct 221 CTGTTCATGCAGCGGGTGGAGGAGAATGGGGACTGGACTCTCATGTGTCCGCATGAGTGC 280 Query 19673 CCTGGCCT 19680 | || || Sbjct 281 ACCGGTCT 288 >seq195337 Length=3657 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 78225 CTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGAT 78284 |||||||||||| | |||||| || | | || | |||| | | ||| || Sbjct 394 CTTCCATCCGTAGAAGTGCATGCTTGTGATTTTCCCGTAGTTCGGCTCGGCGATGTGAAT 453 Query 78285 GTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGA 78344 ||| ||||||||| ||||||||| | |||||||||||||||||||| | ||| || | Sbjct 454 GTTCAGCGACTGGCTTTGGTCGATGAAGGCACCGCGGTCGGCCGCCATCTTGATCACGGT 513 Query 78345 CTTTTGCGGAATCTCCCAGATGGTC 78369 || |||| ||||||||||| |||| Sbjct 514 TTTCTGCGAAATCTCCCAGACGGTC 538 >seq118491 Length=654 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 || || ||| |||| ||| |||| | || | || || || |||||||| || || Sbjct 280 GAAACCTACAACCTTATGTCGGAGAAATGGTTTATACATGCCACACCGACCCTCTTTAAT 221 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || ||||| ||||| | || | ||||||||||| | || ||||||| || ||||| Sbjct 220 GCTGGTACCAACAAGGCTCAACTTGCGAGCTGTTTCTTGCTGACTATGAAAGAGGACAGT 161 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || || || | || ||||| || |||| || | |||||||||| | ||||| Sbjct 160 ATGGACGGTATATTTGAAACGCTGAAACAGTGTGCACTAATCTCCAAGTCCGCTGGGGGG 101 Query 19346 ATCGGGATCCAC 19357 |||||| || || Sbjct 100 ATCGGGGTCAAC 89 >seq38558 Length=2845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || || ||||| || | ||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 2337 AGTTGCTTCCTGCTGACCATGAAAGATGACAGCATTGACGGCATCTATGAGACTCTGAAG 2396 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| |||| |||||| |||| |||| || ||||| Sbjct 2397 CAGTGTGCGCTCATCTCTAAGTCCGCCGGTGGCATCGG 2434 >seq23123 Length=2086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| || | ||| || ||| |||||||||| | ||||| | ||||| | ||| Sbjct 576 GAACTCCCCAGACAGCACCCTGCGTGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTC 635 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAG 78620 |||||| |||| |||||| ||||| || || ||||||||||| || | ||| || Sbjct 636 GTTGTTACCCAGGATCTGTGCGGTGGACGCAGTCGGCATGGGGGCCAGCAGCAG 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547068699779040