Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq88155 113 5e-20 seq13246 102 9e-17 seq26009 89.7 6e-13 seq151727 84.2 2e-11 seq208936 82.4 8e-11 seq38558 82.4 8e-11 >seq88155 Length=6096 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 |||||||| ||||||||||| |||||||| ||||| | ||||| || || || | Sbjct 101 TTCGCCATGTACCTCGAGCCCTGGCACGCTGACATCTTCGAGTTCCTTGACGCCCGCAAG 160 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGA 53688 || ||| | |||||| ||| ||| || ||||||||| || ||||||||||||| Sbjct 161 AACACGGGCAAAGAAGAGCAGCG-TGCTCGGGACCTGTTTTACGCCATGTGGATTCCGGA 219 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||| |||||||| ||||||| || | | ||| ||| || ||||| ||| | ||||| Sbjct 220 CCTGTTCATGCAGCGGGTGGAGGAGAATGGGGACTGGACTCTCATGTGTCCGCATGAGTG 279 Query 53749 CCCCGGCCT 53757 | |||| || Sbjct 280 CACCGGTCT 288 >seq13246 Length=1394 Score = 102 bits (112), Expect = 9e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| ||||| |||| ||| ||||| |||||||| || | ||||| ||||| || Sbjct 489 AGTGAAGATGTATCGAGGGCTGGCAGCGTCCTTGCCTCCGTGGATCCGCGTGCCGAACTG 548 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | |||| || ||||||| ||||||| |||||||||||| || |||||||||| Sbjct 549 GCCGATGGGCTGCAGCAGGTTCACGTTGTTGCTGCCCACAAAGTTCTGCGCCAAGTTGAT 608 Query 117424 AATCGTACC 117432 ||||| || Sbjct 609 GATCGTTCC 617 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| || |||||||| || | |||||| || ||||| Sbjct 490 GTGAAGATGTATCGAGGGCTGGCAGCGTCCTTGCCTCCGTGGATCCGCGTGCCGAACTGG 549 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || ||||| | ||||||| |||||| || ||||| ||||| || | Sbjct 550 CCGATGGGCTGCAGCAGGTTCACGTTGTTGCTGCCCACAAAGTTCTGCGCCAAGTTGATG 609 Query 152149 ATCGTGCCC 152157 ||||| ||| Sbjct 610 ATCGTTCCC 618 >seq26009 Length=2271 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| || |||||||| || | |||||| || ||||| Sbjct 1688 GTGAAGATGTATCGAGGGCTGGCAGCGTCCTTGCCGCCGTGGATCCGCGTGCCGAACTGG 1629 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || ||||| | ||||||| ||| || || ||||| ||||| || | Sbjct 1628 CCGATGGGCTGCAGCAGGTTCACGTTGTTGCTGCCGACAAAGTTCTGCGCCAAGTTGATG 1569 Query 152149 ATCGTGCCC 152157 ||||| ||| Sbjct 1568 ATCGTTCCC 1560 >seq151727 Length=1513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 118176 CCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAA 118235 ||||||||||| | | ||||||| ||||| || |||||||||||||| | ||||| | Sbjct 1513 CCCGAACGTTGAGAAGTTTACCCCTGAGTGGGAAGACGCCAAACTTGTCCCTTCCCACCA 1454 Query 118236 CGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGC 118295 | | || || | | || |||| ||| || ||||||||||| || | ||| || |||| Sbjct 1453 CCCCCAGCCCCGACACGGCCAGGGTCTTGGCTGAGTCACCCTCTGTGAGAATCAGCGTGC 1394 Query 118296 ACTC 118299 | || Sbjct 1393 AGTC 1390 >seq208936 Length=1094 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || ||||| |||||||| ||| | |||||||||||| | Sbjct 97 CCTGCTGCTGGCCCCCATGCCGACTGCGTCCACGGCTCAAATCCTCGGCAACAACGAGTC 38 Query 55552 GTTCGAGCCGTACACGACCAACATCTAC 55579 ||||| | ||||| | |||||||||| Sbjct 37 CATCGAGGCCTACACCAGCAACATCTAC 10 >seq38558 Length=2845 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || ||||||||| || | ||||| |||||| || ||||||||||| ||||| || ||| Sbjct 2337 AGTTGCTTCCTGCTGACCATGAAAGATGACAGCATTGACGGCATCTATGAGACTCTGAAG 2396 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||| | |||||| |||| | ||||| ||||| Sbjct 2397 CAGTGTGCGCTCATCTCTAAGTCCGCCGGTGGCATCGG 2434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545763374086800