Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq114 143 3e-29 seq142507 109 6e-19 seq90790 95.1 1e-14 seq26009 84.2 2e-11 >seq114 Length=3964 Score = 143 bits (158), Expect = 3e-29 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || ||||| ||||| || || || ||||| ||| | Sbjct 2895 AATGCAGATTTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCGTC 2954 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| ||||||| || || |||||||||||||| || || |||||||| Sbjct 2955 CGACACTATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 3014 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || ||||||| ||| ||||| | ||||| || Sbjct 3015 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAA 3074 Query 27585 TGTCCAAAAGG--AATCCACT 27603 |||| |||| || ||||| Sbjct 3075 CATCCAGAAGGGTAAGCCACT 3095 >seq142507 Length=2538 Score = 109 bits (120), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 24723 TTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAG 24782 ||||||||||| || || || |||| ||| ||||||||||| |||||| |||| Sbjct 1788 TTTTATCAGGCATCGACAAGCGAAATGTATGGGCTGGTGCAGGAGATTCCACAGAAGGAG 1847 Query 24783 ACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATA 24842 ||||| ||||| |||||| || ||| ||||| | | ||||| | || ||||||||| Sbjct 1848 ACCACACCATTCTATCCGAGATCCCCCTATGGAGCAGCGAAGGTATATGCATACTGGATA 1907 Query 24843 ACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCAT 24902 |||||| | |||||| | |||| ||| ||||| || || ||||||||||| Sbjct 1908 GTGGTCAACTACAGAGAGGCCTACAATATATTTGCCTGCAATGGGATCCTGTTCAACCAC 1967 Query 24903 GAG 24905 ||| Sbjct 1968 GAG 1970 >seq90790 Length=3890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| || || || ||||| ||||| || || |||||||| ||| | Sbjct 1170 ATCATGCAGATCTTTGTGAAAACCCTGACCGGGAAGACCATCACCCTTGAGGTCGAGCCT 1111 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | |||| | ||||| || || || ||||||||||| || || |||||| Sbjct 1110 TCAGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGAC 1051 Query 27523 CAGCA 27527 ||||| Sbjct 1050 CAGCA 1046 >seq26009 Length=2271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 ||| || || ||||| | || |||||||||||||| || ||| ||||| | || | Sbjct 1560 GGGAACGATCATCAACTTGGCGCAGAACTTTGTCGGCAGCAACAACGTGAACCTGCTGCA 1619 Query 32181 G-CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTT 32239 | ||||| || ||||| || || ||| || ||| |||||||| ||||| ||| | || | Sbjct 1620 GCCCATC-GGCCAGTTCGGCACGCGGATCCACGGCGGCAAGGACGCTGCCAGCCCTCGAT 1678 Query 32240 ACATCTTCAC 32249 |||||||||| Sbjct 1679 ACATCTTCAC 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568796468269920