Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq118554 273 2e-68 seq46062 141 8e-29 seq82958 129 5e-25 >seq118554 Length=928 Score = 273 bits (302), Expect = 2e-68 Identities = 470/675 (70%), Gaps = 8/675 (1%) Strand=Plus/Plus Query 29795 TTAAAGTCGTCCA-GGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853 ||||||||||| | |||| || || | | || || | || ||||| ||||| | || Sbjct 221 TTAAAGTCGTCGATGGCTTTC-ACGCGGCAATTGATATTGAGAGTGGGGAAGGGCCGCGG 279 Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913 ||||||| | || || || | || |||| || || || |||||||||||||| Sbjct 280 CTCCCTCCTCAATTGTTCATTAAGAGCATCGACGTGATTGAGATAAACGTGAGCGTCTCC 339 Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973 |||| | || ||||| ||||| || | || || |||||||| || |||||||| || || Sbjct 340 CAGGCTATGAACAAAGTCTCCAGGCTTTAATCCTGTGACGTGGGCTATCATGTAGGTCAG 399 Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 ||| ||||| || || || || || || ||||||||||||||||| || | |||||| Sbjct 400 CAGACTATAGCTAGCAATATTGAAAGGAACGCCGAGCCCCATGTCCCCGGAGCGCTGGTA 459 Query 30034 GAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT-GACACATGGCGTGGCACGGAG 30092 || || || |||||||| |||| | |||||||||| |||| | || || || || | Sbjct 460 CAGATGGCAGGAGAGCTCGCCGTTACAAACGTAAAACTGGACA-AAAGCATGACAGGGGG 518 Query 30093 GAAGAGCCA--TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30150 | || | || | ||| || ||| |||||||| ||| ||| ||| || | |||| Sbjct 519 GTAGCGTCATCTTAGG--CAGATCTGGTGGGTTCCATGCGGACATGATAATCCTCCTGCT 576 Query 30151 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30210 || |||| ||| | | | | | | | | || ||| ||||| ||| ||||| Sbjct 577 ATCAGGGTCATTCTTTACGGTTTGGATGACTTGGGCCAACTGGTCCACACCCTGCCCCGT 636 Query 30211 GTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30270 ||| || | | | ||| | || ||||| || || |||||||| || || || || || Sbjct 637 GTAATCCGTATGCCTATCCTTATATTCTGCACCAAAGTGCCTCCATTGAAAGCCATAGAC 696 Query 30271 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30330 || |||| ||||||| | || ||| | | || | | ||||||||||||||| || Sbjct 697 AGGACCCAAGTCTCCCACCTCATAGTGATTTAGTCCGCGCCTGTCCAAAAAGTCTCGTGA 756 Query 30331 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 || |||||||||||| || | ||| || || || || || |||| ||| || | || Sbjct 757 ACAGTTGGCGTCCCATATGTGCACCTTTTTATCGGACAGATCCTTGGCGTTCGTACAGCC 816 Query 30391 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30450 | || | ||||| ||||| || || || ||||||| || || | ||| || || || Sbjct 817 CCGAACAAGCCACAAAAGCTCTTCGACAACCCCCTTCCAGAATACACGCTTCGTGGTCAG 876 Query 30451 GAGGGGAAACTGTCC 30465 | ||||||||||| Sbjct 877 CAAAGGAAACTGTCC 891 >seq46062 Length=4436 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| |||||||||||||||||||||||||| ||||| Sbjct 429 AGTCCAGTGATGTGGGCTATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGA 488 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||| |||| || || | |||||| |||||||| || ||||| |||| | | Sbjct 489 ACGCCAAGGCCCGTGTCTCCAGAGCGCTGGTACAGCTGACATGACAGCTCACCGTTACAC 548 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| ||||| | |||||| || ||||| || ||||| Sbjct 549 ACGTAGAACTGGACGAAGGCGTGACAGGGAGGCAGCGCCAT 589 >seq82958 Length=1740 Score = 129 bits (142), Expect = 5e-25 Identities = 174/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 30227 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30286 ||| ||||||| || || || |||||||||||||| |||||||| || |||||||| ||| Sbjct 900 TCCTTGTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACAGGGCCCAGGTCCCCC 959 Query 30287 TCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30345 || || || ||| | || | |||||||| ||||||| ||||||||||| ||||| Sbjct 960 TCCTCATAATGGCTC-AGTCCACGCTTGTCCAGGAAGTCTCGTGAACCGTTGGCATCCCA 1018 Query 30346 GATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30405 ||| | ||| || || || || || ||| || || | || | |||||||||| Sbjct 1019 GATGTGCACCTTTTTGTCGGAAAGTTCCTTGCCGTCCGTACAGCCGCGAACGAACCACAA 1078 Query 30406 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30465 |||||||| |||| | |||| || || | || || || || | |||||||| || Sbjct 1079 GAGCTCCTCAGCGACCCCTCTCCAGAACACACGTTTTGTAGTCAGCAAAGGAAACTGCCC 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405258783105672