Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq118554 237 1e-57 seq46062 132 4e-26 seq82958 118 9e-22 >seq118554 Length=928 Score = 237 bits (262), Expect = 1e-57 Identities = 478/712 (67%), Gaps = 4/712 (1%) Strand=Plus/Plus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCA-GGCTCTC 29586 ||||| |||| |||||| || ||| || || ||||||||||| | |||| || Sbjct 182 GGGTGTGGGTTGTAGCCAGTTAGTTTGAAGTCTTCGAATTTAAAGTCGTCGATGGCTTTC 241 Query 29587 CACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCT 29646 || | | || || | || ||||| ||||| | ||||||||| | || | Sbjct 242 -ACGCGGCAATTGATATTGAGAGTGGGGAAGGGCCGCGGCTCCCTCCTCAATTGTTCATT 300 Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | || ||||| | || || |||||||| ||||||||| | || ||||| ||||| Sbjct 301 AAGAGCATCGACGTGATTGAGATAAACGTGAGCGTCTCCCAGGCTATGAACAAAGTCTCC 360 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | || || |||||||| || |||||||| || || ||| ||||| || || || Sbjct 361 AGGCTTTAATCCTGTGACGTGGGCTATCATGTAGGTCAGCAGACTATAGCTAGCAATATT 420 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 || || || ||||||||||||||||| || | |||||| || ||||| |||||||| || Sbjct 421 GAAAGGAACGCCGAGCCCCATGTCCCCGGAGCGCTGGTACAGATGGCAGGAGAGCTCGCC 480 Query 29827 GTCGCTCACGTAAAACT-GACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGT 29885 || | |||||||||| |||| | ||||| || || || || | ||| | || | Sbjct 481 GTTACAAACGTAAAACTGGACA-AAAGCATGACAGGGGGGTAGCGTCATCTTAGGCAGAT 539 Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 || |||||||| || ||| ||| || | |||| || |||| ||| | | | | Sbjct 540 CTGGTGGGTTCCATGCGGACATGATAATCCTCCTGCTATCAGGGTCATTCTTTACGGTTT 599 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNN 30005 | | | | || ||| ||||| ||| ||||| ||| || | Sbjct 600 GGATGACTTGGGCCAACTGGTCCACACCCTGCCCCGTGTAATCCGTATGCCTATCCTTAT 659 Query 30006 NNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 30065 | || |||||||| || || || || || || |||| ||||||| | || Sbjct 660 ATTCTGCACCAAAGTGCCTCCATTGAAAGCCATAGACAGGACCCAAGTCTCCCACCTCAT 719 Query 30066 TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30125 ||| | | || | | ||||||||||||||| |||| |||||||||||| || | | Sbjct 720 AGTGATTTAGTCCGCGCCTGTCCAAAAAGTCTCGTGAACAGTTGGCGTCCCATATGTGCA 779 Query 30126 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30185 || || ||||| || || |||| ||| || | || | || | ||||| ||||| | Sbjct 780 CCTTTTTATCGGACAGATCCTTGGCGTTCGTACAGCCCCGAACAAGCCACAAAAGCTCTT 839 Query 30186 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30237 | || || ||||||| || || | ||| || || || | ||||||||||| Sbjct 840 CGACAACCCCCTTCCAGAATACACGCTTCGTGGTCAGCAAAGGAAACTGTCC 891 >seq46062 Length=4436 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| |||||||||||||||||||||||||| ||||| Sbjct 429 AGTCCAGTGATGTGGGCTATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGA 488 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||| |||| || || | |||||| ||||| || || ||||| |||| | | Sbjct 489 ACGCCAAGGCCCGTGTCTCCAGAGCGCTGGTACAGCTGACATGACAGCTCACCGTTACAC 548 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| ||||| | ||| || || ||||| || ||||| Sbjct 549 ACGTAGAACTGGACGAAGGCGTGACAGGGAGGCAGCGCCAT 589 >seq82958 Length=1740 Score = 118 bits (130), Expect = 9e-22 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG-CTCGAA 30075 || |||||||||||||| |||||||| || |||||||| ||||| || || ||| | Sbjct 918 AAGTGCCTCCACTGGAAACCGTACACAGGGCCCAGGTCCCCCTCCTCATAATGGCTC-AG 976 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 || | |||||||| ||||||| ||||||||||| |||||||| | ||| || || Sbjct 977 TCCACGCTTGTCCAGGAAGTCTCGTGAACCGTTGGCATCCCAGATGTGCACCTTTTTGTC 1036 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 ||| || || ||| || || | || | |||||||||| |||||||| |||| | Sbjct 1037 GGAAAGTTCCTTGCCGTCCGTACAGCCGCGAACGAACCACAAGAGCTCCTCAGCGACCCC 1096 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30237 |||| || || | || || || || | |||||||| || Sbjct 1097 TCTCCAGAACACACGTTTTGTAGTCAGCAAAGGAAACTGCCC 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405111964090276