Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asymmetron_20lucayanum_20[genbank_20GCA_5F001663935.1_202016-06-16] 212,366 sequences; 460,590,149 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq150367 233 3e-56 seq195337 109 8e-19 seq80537 86.0 9e-12 >seq150367 Length=3699 Score = 233 bits (258), Expect = 3e-56 Identities = 578/876 (66%), Gaps = 32/876 (4%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| || ||||| || ||| |||||||| || || | || || Sbjct 1548 GACATCACTCCCATCTTCTGGTACTCTCCTGGCTTCTTCTCGAAGAAGTTGGCCTTCCCC 1607 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443 |||| || || || ||||| || ||||| ||||| || || || || | | Sbjct 1608 TCCAGGGAGATGTTCTCCATGAAGTCAAAAGGATTG------TTGTAGATCTTACTGCAC 1661 Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 | | ||| | || | |||| || || | |||||| |||| ||| ||| Sbjct 1662 TCGAGTTCACCCAATAGCCGGCCTGCTACAAACACGATATACTGTTTCCTCAGGTCATTT 1721 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || || || | || ||||||||||| || ||||| || |||| | || Sbjct 1722 TTCATACCAATCAGCTTCAGGGGAAGAGCCTCCGTCAGGAACTCCTGAGCAATCTTCACG 1781 Query 46564 GCATC--CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 |||| |||| | ||| | | | |||||||| || | | ||||||| | Sbjct 1782 GCATTGTCGATGATCTCGTGGATG--GGCTCCTCACTAGGCTTGTTAACCAAATGTCCGA 1839 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||| ||||| ||||| || ||||| ||||| ||||| || | ||| || || | Sbjct 1840 ACATCAGACAGGCAAAGTCACAGTGTAGGCCCTCATCCCTACTGATCAGTTCATTGGAGA 1899 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | || ||||| ||||||| || |||||| ||||||| |||| || || || || | Sbjct 1900 ACGTCAGCCC-GGCATTATCCCTATCTTTTTCAGCCAAATGTTAGCTGCAAAGGAGCCCG 1958 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 | || || ||| |||| || || || || || | || |||| | Sbjct 1959 AGAAAAAGATGTCTTCCACCGCATTAAAGGCAACCACGCT-------------GCATTGT 2005 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 ||||| || ||||||| |||||||| |||||| |||| ||| | || || | | Sbjct 2006 CTCCGATCCATCTAAGAGCCCATTCAGCCTTCTTCTTTGCACACGGCGTGGTCTCATTCG 2065 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 |||| ||||| | || || | ||| || | | || || || || ||||| | Sbjct 2066 CATTGAAGAGGTGCTCCTTCTCCTGTGGATCCTTGATGAAGGTGTCGATCAAGAGACTGT 2125 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| || ||||| ||||| || || || || || || || || || || || || | Sbjct 2126 ACATTTCAGAGTGAATATTTTCCATGGCAATTTGGAAGCCCTAGAAGCACCTGGCCTCGG 2185 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTAT-----TCCATC 47036 | | || |||||| | |||| || || ||||||||| || | |||||| Sbjct 2186 TCACCTTGACCTCTTGGCTGAATCTCTCCACCAGATTCTCATTGACGTTGGTTGTCCATC 2245 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||||| ||||| ||||||| || ||||| || || | | ||| || | |||| || Sbjct 2246 GCTAGCCGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTCTTTTGTCATCACTCAGCTT 2305 Query 47097 ATTCCAGT---CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 | ||||| | | ||||| || | |||||||| ||| ||||||||||||| || Sbjct 2306 CTCCCAGTAGGCCAAGTCCTCTTTCGAGAGGTCTACTTCCTCAACTGTCCAGAATGATGC 2365 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 || | ||| || ||||| |||||| || || || Sbjct 2366 CTAGGTTTTCTTCTACATCCGCCATATGTCGCGGTA 2401 >seq195337 Length=3657 Score = 109 bits (120), Expect = 8e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| ||||||||||||| ||||||||||| | ||| || |||| ||||| || | Sbjct 390 CCAGCTTCCATCCGTAGAAGTGCATGCTTGTGATTTTCCCGTAGTTCGGCTCGGCGATGT 449 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 |||| |||| |||||| ||||| |||||||| || || | || |||||||| || || | Sbjct 450 GAATGTTCAGCGACTGGCTTTGGTCGATGAAGGCACCGCGGTCGGCCGCCATCTTGATCA 509 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 ||| || || | ||| ||||| | || ||| | | || ||||| ||||| Sbjct 510 CGGTTTTCTGCGAAATCTCCCAGACGGTCTTGTATAGTTCACGTATATCCTCTGG 564 >seq80537 Length=9825 Score = 86.0 bits (94), Expect = 9e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 170095 ATATATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAATGAGGGT 170154 || || || || |||||||| ||||| || | || | ||||| || | ||||| Sbjct 1733 ATCTACGAACCTGGAAAACGACATTGGCTCAAGGTCAAAAAGGACTATTTAGAACAGGGT 1792 Query 170155 TCGATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAG 170214 | ||||| || | ||||| || ||||| ||||||| | ||| || | ||||| || Sbjct 1793 GCAATGGCAGACACAGCAGACTTGGTAGTGCTGGGGGCGTTTTACGGCACAGGAAATAAA 1852 Query 170215 GGTGGAATGATGGCAGTATTTTTGATGGGTTGCTACGATGACGACTCTGGTAAATGGAAG 170274 || || ||||| |||| || | |||||| || ||| ||| |||| || ||| Sbjct 1853 GGAGGGTTGATGTCAGTGTTCCTTATGGGTGTGTATGATCCTGACACTGGCAAGTGGTGC 1912 Query 170275 ACTGTAACTAAATGTTC---TGGACATGATGATAACAC 170309 ||||| || || ||| |||||||||||| ||||| Sbjct 1913 ACTGTGACCAAGTGTGGAAATGGACATGATGACAACAC 1950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711041862165120