Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq45842 136 5e-27 seq63864 109 7e-19 >seq45842 Length=221613 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || ||| || || || || ||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || | ||||| ||||| || ||||||||||||||||| ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 24277 CAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 | | || ||| ||| |||| | || || |||| ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 |||| | ||||||||| ||||||||||| ||||||||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 || |||||||| || ||||| ||||| ||||||||||| || | | |||| ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | | || || | | || || | ||||| | |||||| || | ||| ||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || | ||||| || || || ||||| || || ||||| | |||||||||||| || ||| Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733 Query 24699 ATTGGAAAAATAACAAATC 24717 || || || | |||||||| Sbjct 81734 ATGGGGAAGACAACAAATC 81752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||| | || |||||||| | | ||||||||||| ||||||||||| || ||||| Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 || || || || || |||||||| || || ||| ||||||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 >seq63864 Length=1411193 Score = 109 bits (120), Expect = 7e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||||| || |||||||| || | | ||| |||||||||||||| || |||| ||| | Sbjct 1069200 TCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 54068 ||||||||| | || || |||||||| || | || |||||||| | ||| ||| | Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 | ||||| |||| |||| ||| || || ||||| || || || || | ||| | | Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||||| |||||| ||||||| ||| || Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACAT 1069408 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||| || ||||||||||| | |||||| || ||||| || || | || | Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 |||||| |||||||| | |||||||| || || || || |||||||| || | |||||| Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025 Query 53269 ACTATTTCTAAGACC 53283 || ||||| | ||| Sbjct 1056026 GCTGTTTCTTATACC 1056040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 |||||| | || || ||||| || || ||||| || | ||||||||||| |||| Sbjct 1063028 GATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAGA 1063087 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCT-TATTTAGATC-TTGTGCTTCCAGGCTAT 53498 ||| | ||||| || || || || || |||| | |||| ||| ||| || ||| || | Sbjct 1063088 GCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTTGGGCCTCCTCACTCT 1063145 Query 53499 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 53558 ||||||| | | | | ||| || || || || | |||||| || |||||||| |||| Sbjct 1063146 CAAATGGGAATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATAG 1063205 Query 53559 GTCTATGTCTCTTATTAGAGATTTCAGC 53586 |||| |||| | | || || ||| ||| Sbjct 1063206 GTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 ||||| || ||||| || || || |||||||| || |||||||| | |||||||||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||| |||||| ||| || || | ||| | || ||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 53869 TTCTATAATCGCTTTCCA 53886 ||| ||||| || | ||| Sbjct 1067976 TTCAATAATGGCGTACCA 1067993 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 54395 AGAAAACAG--CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 |||||||| |||||||||||| |||||| |||||| ||||| || || || || || | Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 |||| ||||||||| |||| || || || || || |||| Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCT 1075771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593234288153760