Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq13065 127 3e-24 seq63207 122 1e-22 >seq13065 Length=295510 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| ||||| || || || ||| | ||| ||||| | Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| ||||| ||||| |||||||| || || || ||||| Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || || ||| | || ||| | || || || ||| || ||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||||||||| | ||||| || || ||||| |||| ||||| ||| || Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGTATGCAAATTT 163871 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| || || || || || || | ||| ||||| || Sbjct 163862 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 163921 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || || || || || ||||| || || || ||||| Sbjct 163922 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 163981 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || |||||| | || ||| |||| || || ||| || ||| Sbjct 163982 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 164041 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||||||||| | ||||| || || ||||| |||| ||||| ||| || Sbjct 164042 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGTATGCAAATTT 164099 >seq63207 Length=555540 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || | ||||| |||||||| || | ||| | ||| || Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| || |||||||| |||||||| || ||||| ||||| Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||| | || ||| | | || | ||| ||||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || || ||||| | ||| | || | |||||||| ||||| Sbjct 378708 ATTCAGAAGGAGTCAACACTTCATCTTGTACTGCGTTTACGTGGTGG 378662 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || | || || |||||||| || | ||| | ||| || Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | ||| || |||||||| |||||||| || || || ||||| Sbjct 379284 GACTCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379225 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || |||||| | || ||| | |||| | ||| ||||| Sbjct 379224 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAAC 379165 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || ||||| | ||| | || | ||| | |||| ||||| Sbjct 379164 ATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGGTAT 379115 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 124563 ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAG 124622 || || |||||||| || | ||| | ||| || || ||||| ||| | ||| Sbjct 321960 ACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGACGCAATTGAAAATGTCAAATCT 321901 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||||||||||| || ||||| ||||| ||||| | ||||| || || ||| Sbjct 321900 AAGCTTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGATTGATTTTCGCTGGTAAA 321841 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| || |||| | ||| ||||| ||||| || || || || | ||| Sbjct 321840 CAACTTGAAGATGGTAGAACCCTCTCAGACTATAACATTCAGAAGGAGTCGACACTTCAT 321781 Query 124743 TTGGTTTTACGT-TTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 | || ||| | |||| ||| ||||| ||| ||| || |||| Sbjct 321780 CTTGTACTACATCTTAC-AGGAGGTATGCAAATATTTATCAAAA 321738 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || | || || |||||||| || | ||| | ||| || Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | ||| || |||||||| |||||||| || || || ||||| Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || |||||| | || ||| | |||| | || || || Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAAC 378937 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || ||||| | ||| | || | ||| | |||| ||||| Sbjct 378936 ATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGGTAT 378887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754835940601600