Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13065 93.3 4e-14 seq63207 87.8 2e-12 >seq13065 Length=295510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | || | ||| || || |||| || || ||||| ||||||||||| || | Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGAC 164257 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || || ||||| || || |||||||||| |||||||| || || Sbjct 164256 AAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 164197 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || ||||| || || || || | ||| | |||||| | || | || || Sbjct 164196 ATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGT-TCAAC 164138 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || || || || || ||||| || ||||| ||||| Sbjct 164137 CTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 >seq63207 Length=555540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/213 (71%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCG--CGT--ATCC 118586 |||| || | ||| ||||| || ||||||||||| ||| || ||| | | ||| Sbjct 378909 CAAGATGAAGTGTTGACTCCTTCTGAATGTTGTA----GTCAGAGAGCGTTCTTCCATCT 378964 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| |||||| | || | | |||||||| ||||| || || || |||||| Sbjct 378965 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379024 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | ||| | ||||| | || | || ||||| | || | || Sbjct 379025 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGT-TCTACCTCAAGTGTGATAGT 379083 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||||| |||||| ||||| || ||||| Sbjct 379084 TTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTC 118588 |||| || | ||| ||||| || ||||||||||| | || | || | | | ||| || Sbjct 379365 CAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGT--CTGAGAGGGTTCTTCCATCTTC 379422 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| |||||| | || | | |||||||| ||||| || || || |||||| Sbjct 379423 AAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG 379482 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | ||||| ||| || | || ||||| | || | ||||| Sbjct 379483 AATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTTTT 379542 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| |||||||| Sbjct 379543 ACCAGTAAGGGTCTTTACAAAGATCTGCAT 379572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| ||||| |||||||||||||| || | || | ||| || | Sbjct 322020 CAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCTTCAA 322079 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| |||||| | || | | |||||||| || || || || || |||||| || Sbjct 322080 GTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAA 322139 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | ||||| ||| || | || ||||| | || | ||||| | Sbjct 322140 TCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTTTTAC 322199 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || |||||||| |||||||| Sbjct 322200 CAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433483224782104