Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq61240 105 8e-18 seq55995 105 8e-18 seq33089 105 8e-18 seq14972 105 8e-18 seq11408 105 8e-18 seq63522 102 9e-17 seq58119 102 9e-17 seq51393 102 9e-17 seq395 100 3e-16 seq60785 93.3 5e-14 seq13065 86.0 7e-12 seq63207 84.2 2e-11 >seq61240 Length=1860 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 838 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 779 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 778 TAACCACTATACTACCGAGGA 758 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1712 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1653 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1652 TAACCACTATACTACCGAGGA 1632 >seq55995 Length=98891 Score = 105 bits (116), Expect = 8e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 5067 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 5008 Query 60126 TACTACCGAGGATTGAATATA-TAACTTGA 60154 |||||||||||| | | ||| |||| ||| Sbjct 5007 TACTACCGAGGACTTACCATAGTAACGTGA 4978 >seq33089 Length=5378 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 674 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 615 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 614 TAACCACTATACTACCGAGGA 594 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1535 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1476 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1475 TAACCACTATACTACCGAGGA 1455 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4754 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4695 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 4694 TAACCACTATACTACCGAGGA 4674 >seq14972 Length=104360 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 97722 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 97781 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 97782 TAACCACTATACTACCGAGGA 97802 >seq11408 Length=986 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 122 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 63 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 62 TAACCACTATACTACCGAGGA 42 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 986 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 927 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 926 TACTACCGAGGA 915 >seq63522 Length=3463 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 763 AATAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 704 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||| |||| Sbjct 703 TAACCACTATACTACCAAGGA 683 >seq58119 Length=236802 Score = 102 bits (112), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 |||||||| | ||||||||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 190021 TCCTCGGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGTGATACTAACCACTAT 189962 Query 60127 ACTACCGAGGA 60137 ||||||||||| Sbjct 189961 ACTACCGAGGA 189951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| | ||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 64450 CTCCCCGGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 64391 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 64390 TACTACCGAGGA 64379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| | ||||||||||| |||||| |||||||||||||| ||||| ||||||| Sbjct 46661 CTCCCCGGCGGAGAATCGAACCCCGGTCTCGCGCGTGACAGGCGGGGATACTAACCACTA 46602 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 46601 TACTACCGAGGA 46590 >seq51393 Length=190741 Score = 102 bits (112), Expect = 9e-17 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||| |||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 13145 CTCCCCGGCGGGGATTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 13086 Query 60126 TACTACCGAGGA--TTGAA-TATATAA 60149 |||||||||||| ||||| |||| || Sbjct 13085 TACTACCGAGGAATTTGAAGTATACAA 13059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| |||| |||| || ||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 11209 TCCCCGGCGGGGATTCAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTAT 11150 Query 60127 ACTACCGAGGA--TTGAA-TATATAA 60149 ||||||||||| ||||| |||| || Sbjct 11149 ACTACCGAGGAATTTGAAGTATACAA 11124 >seq395 Length=120883 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 |||| ||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| | Sbjct 18789 AATTAGCTCTTCGGCGGGGAATCGAACCCTGGTCTCCCGTGTGACAGGCGGGGATACTAA 18730 Query 60120 CCACTATACTACCGAGGA 60137 ||||||| |||||||||| Sbjct 18729 CCACTATGCTACCGAGGA 18712 >seq60785 Length=27705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| |||| ||||||||||||| |||||||||||||||||||| |||| Sbjct 8793 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCTGTCTCCCGCGTGACAGGCGGGGATAC 8852 Query 60117 TCACCACTATACTACCGAG 60135 | | ||||||||||||||| Sbjct 8853 TAAACACTATACTACCGAG 8871 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| | |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 9645 AATAATGTCCTCCCCG-CGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 9703 Query 60117 TCACCACTATACTACCGAGGA 60137 | || |||||||||||||||| Sbjct 9704 TAACTACTATACTACCGAGGA 9724 >seq13065 Length=295510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| |||||||| || ||||| | || || || ||||||||||| || | | Sbjct 163860 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 163801 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || || |||||||| || || ||||| || ||||| || | || Sbjct 163800 AAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163741 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || ||||| |||||| || | | | | ||||| | ||| || Sbjct 163740 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACC 163681 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || || || |||||||| ||||| Sbjct 163680 TCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 >seq63207 Length=555540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | || | ||| | ||| |||||||||||| ||||| || | Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAG 322060 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || || || || ||||||||||| || | || ||||| || | || Sbjct 322061 AGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGA 322120 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| | || | ||||| | | | || || | |||||| Sbjct 322121 ATTCCTTCTTTGTCT-TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCAC 322179 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || |||||||||||||| ||||| Sbjct 322180 CTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | || | ||| | ||| |||||| ||||| ||||| || | Sbjct 379346 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAG 379405 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || || || || ||||||||||| || | || ||||| || | || Sbjct 379406 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379465 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| | || | ||||| | | | || || | |||||| Sbjct 379466 ATTCCTTCTTTGTCT-TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCAC 379524 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || |||||||||||||| |||||| Sbjct 379525 CTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571348266409360