Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq63207 120 5e-22 seq57759 93.3 6e-14 >seq63207 Length=555540 Score = 120 bits (132), Expect = 5e-22 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| ||||| || || || | ||| || | |||||| |||||||||||||||||| Sbjct 378707 ATGTTATAGTCTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTT 378766 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || |||||||||||||| ||||| || Sbjct 378767 TGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTG 378826 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| |||||| || |||||||| ||||||||||| || ||||| | ||||||||| Sbjct 378827 TCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGC 378886 Query 146276 AT 146277 || Sbjct 378887 AT 378888 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | | ||| | ||| | || || || || || ||||| ||||| Sbjct 379118 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 379177 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | |||||| ||||| |||||||||||||||||||| |||||| Sbjct 379178 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379237 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| | ||||| |||||| Sbjct 379238 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACC 379297 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| |||||||| || || ||||| | ||||||||||| Sbjct 379298 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 116 bits (128), Expect = 5e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | | ||| | ||| | || || || || || || || || || Sbjct 378890 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAG 378949 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | |||||| ||||| |||||||||||||||||||| |||||| Sbjct 378950 AGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379009 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| || ||||| |||||| Sbjct 379010 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACC 379069 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| |||||||| || || ||||| | ||||||||||| Sbjct 379070 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | | ||| | ||| | || || || || || || || ||||| Sbjct 379346 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAG 379405 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | |||||| ||||| |||||||||||||||||||| |||||| Sbjct 379406 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379465 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 379466 ATTCCTTCTTTGTCTTG 379482 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| ||||| || ||||| | ||| || | |||||| ||||| |||||||||||| Sbjct 321803 ATGTTATAGTCTGAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTT 321862 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || || ||||||||||||||||| Sbjct 321863 TGCTGATCTGGTGGGATTCCTTCTTTATCTTG 321894 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || |||||||| | | ||| | ||| | || || || ||| || || || || || || Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGA-ATGTTGTAGTCCGA 322059 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| || | |||||| ||||| |||||||||||||||||||| || || Sbjct 322060 GAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGG 322119 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| Sbjct 322120 AATTCCTTCTTTGTCTTG 322137 >seq57759 Length=555176 Score = 93.3 bits (102), Expect = 6e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || || | |||||||| ||| ||||| ||||| |||||||| |||||||| Sbjct 199765 ATATTGTAGTCAGACAAAGTTCTGCCATCTTCTAACTGTTTACCAGCAAAGATCAATCTC 199824 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 |||||||| |||||||||||| Sbjct 199825 TGCTGATCTGGAGGAATTCCT 199845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742916132119040