Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04-
05] 65,662 sequences; 1,658,191,953 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq63207 120 5e-22
seq57759 93.3 6e-14
>seq63207
Length=555540
Score = 120 bits (132), Expect = 5e-22
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| ||||| ||||| || || || | ||| || | |||||| ||||||||||||||||||
Sbjct 378707 ATGTTATAGTCTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTT 378766
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215
|||||||| || |||||||||||||| ||||| ||
Sbjct 378767 TGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTG 378826
Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275
||||| |||||| || |||||||| ||||||||||| || ||||| | |||||||||
Sbjct 378827 TCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGC 378886
Query 146276 AT 146277
||
Sbjct 378887 AT 378888
Score = 120 bits (132), Expect = 5e-22
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| | | ||| | ||| | || || || || || ||||| |||||
Sbjct 379118 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 379177
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| || | |||||| ||||| |||||||||||||||||||| ||||||
Sbjct 379178 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379237
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||||||||| ||||| | ||||| ||||||
Sbjct 379238 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACC 379297
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| |||||||| |||||||| || || ||||| | |||||||||||
Sbjct 379298 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344
Score = 116 bits (128), Expect = 5e-21
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| | | ||| | ||| | || || || || || || || || ||
Sbjct 378890 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAG 378949
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| || | |||||| ||||| |||||||||||||||||||| ||||||
Sbjct 378950 AGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379009
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||||||||| ||||| || ||||| ||||||
Sbjct 379010 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACC 379069
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| |||||||| |||||||| || || ||||| | |||||||||||
Sbjct 379070 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| | | ||| | ||| | || || || || || || || |||||
Sbjct 379346 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAG 379405
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| || | |||||| ||||| |||||||||||||||||||| ||||||
Sbjct 379406 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379465
Query 146171 ATTCCTTCTTTATCTTG 146187
||||||||||| |||||
Sbjct 379466 ATTCCTTCTTTGTCTTG 379482
Score = 104 bits (114), Expect = 3e-17
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| ||||| ||||| || ||||| | ||| || | |||||| ||||| ||||||||||||
Sbjct 321803 ATGTTATAGTCTGAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTT 321862
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|||||||| || || |||||||||||||||||
Sbjct 321863 TGCTGATCTGGTGGGATTCCTTCTTTATCTTG 321894
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|| |||||||| | | ||| | ||| | || || || ||| || || || || || ||
Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGA-ATGTTGTAGTCCGA 322059
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| ||||| | ||| || | |||||| ||||| |||||||||||||||||||| || ||
Sbjct 322060 GAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGG 322119
Query 146170 AATTCCTTCTTTATCTTG 146187
|||||||||||| |||||
Sbjct 322120 AATTCCTTCTTTGTCTTG 322137
>seq57759
Length=555176
Score = 93.3 bits (102), Expect = 6e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
||||| || || || | |||||||| ||| ||||| ||||| |||||||| ||||||||
Sbjct 199765 ATATTGTAGTCAGACAAAGTTCTGCCATCTTCTAACTGTTTACCAGCAAAGATCAATCTC 199824
Query 146156 TGCTGATCCGGAGGAATTCCT 146176
|||||||| ||||||||||||
Sbjct 199825 TGCTGATCTGGAGGAATTCCT 199845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742916132119040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |