Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq45842 109 5e-19 >seq45842 Length=221613 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 16622 AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAA 16681 |||||||| || || |||||||| |||||||||||||| ||||| || ||| || ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 16682 tttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 | | || | |||| || ||| ||| | ||||||||||| ||||| || || Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACA 16801 ||| ||||||| || || || | || || || ||||| | ||| ||||| | ||| | Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733 Query 16802 ATAGGAAACACAACA 16816 || || || |||||| Sbjct 81734 ATGGGGAAGACAACA 81748 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 |||||| || ||| || |||||||| | ||||||||| ||||| || ||||| ||||| Sbjct 76799 TGACATTACACCCATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCC 76858 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||||||||| || | |||||| || ||||||||||||| Sbjct 76859 TTCTAATGATATCTGTTCCATGAAGTCAAAAGGATTTT 76896 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || ||||| || ||||| ||||||||||| |||||||| |||||||| || ||||| Sbjct 80947 ATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCAATCTGG 81006 Query 16565 AAACCATAAAAGCATCTAGCTTC 16587 ||||||||||| ||||| ||||| Sbjct 81007 AAACCATAAAAACATCTGGCTTC 81029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462132381713200