Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq45842 114 1e-20 >seq45842 Length=221613 Score = 114 bits (126), Expect = 1e-20 Identities = 94/112 (84%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 14448 AATGTTCCTTCTCT-TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 ||| || | ||||| || || ||| | |||| |||||||| |||||||||||||||||| Sbjct 80921 AATTTTACCTCTCTGTTGGTTCTTTGA-TGTAGGTATCAATGAGTAAGCTATACATTTCA 80979 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 || || ||||| ||||| || ||||| ||||||||||||||||| ||||||| Sbjct 80980 GAATGAATGTTCTCCATGGCAATCTGGAAACCATAAAAACATCTGGCTTCTG 81031 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 ||||||||||||| ||||| || || ||||| || | || ||||| | ||||| ||| Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAA--GTAAGACCAGGCATAATTCCTCTTTT 80299 Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 || | ||| || || || || || || || || || ||||| || ||||| ||||| Sbjct 80300 CTTCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAA 80359 Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCATTTTCTAGCCCATT 14402 |||| | || ||| || | | ||| || | ||| | |||||||| | ||||| | Sbjct 80360 AGCTACAACTCTCTCTGCATATGCTGCATTACT-TTCATTGATCCATTTAATGGCCCAAT 80418 Query 14403 CAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 | | |||| ||| | | | |||||| |||||||||||||| Sbjct 80419 CTGCCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAA 80461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAAT 14646 |||| |||||||| || || |||||||||||||||||||| || ||||||| | || Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGAT--AT 81609 Query 14647 AAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14706 || | | ||||||||| | || |||| ||||| ||||||| || || | ||| || Sbjct 81610 GAAATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAAC 81669 Query 14707 TTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATA 14766 ||| || | ||||| || || | ||||| || ||||| ||| || || | || Sbjct 81670 TTCCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTA 81729 Query 14767 TAATATAGGAAAAACTACAAATC 14789 || || || || ||||||| Sbjct 81730 CTGAATGGGGAAGACAACAAATC 81752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481949702790160