Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq63207 98.7 8e-16 >seq63207 Length=555540 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||||||||| || || |||||||||||||| | | ||| | | |||| Sbjct 378905 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCT 378964 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || | || | |||||| ||||| || | ||||| || || Sbjct 378965 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379024 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || ||||| | | ||| ||||| || || |||| ||||| | Sbjct 379025 TGAATCT-TGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGT 379083 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||||||| ||||| ||||| |||||||| Sbjct 379084 TTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| | ||||| | ||||||||||| || || |||||||| ||||| | Sbjct 378661 TCCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGA 378720 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||| | |||||| || ||| | || | |||||| ||||| || Sbjct 378721 GAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGG 378780 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||| | | || ||||| | | ||| ||||| || || Sbjct 378781 AATTCCTTCTTTGTCTTGAATCT-TGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTA 378839 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||| || ||||| ||||| ||||| |||||||| Sbjct 378840 CCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||||||||| || || |||||||| ||||| | | ||| | | |||| Sbjct 379133 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCT 379192 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || | || | |||||| ||||| || | ||||| || || Sbjct 379193 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379252 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || ||||| | | ||| | ||| || || |||| ||||| | Sbjct 379253 TGAATCT-TGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGT 379311 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||||||| ||||| ||||| |||||||| Sbjct 379312 TTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||||||||| || ||||||||||||||||| | | ||| ||| |||| Sbjct 322016 AGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCT 322075 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || | || | |||||| ||||| || | ||||| || || Sbjct 322076 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 322135 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || ||||| | | | | || ||| || || || | |||||| | Sbjct 322136 TGAATCT-TGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGT 322194 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || | || |||||||| || ||||| Sbjct 322195 TTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379040427830190