Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq45842 116 5e-21 seq63864 104 3e-17 >seq45842 Length=221613 Score = 116 bits (128), Expect = 5e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || ||||||||||| ||||||||||| || | | |||| ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | | || || | | || || | ||||| | |||||| || | ||| ||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || | ||||| || || || ||||| || || ||||| | |||||||||||| || || Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733 Query 34146 ATTGGGAAAATAACAAATC 34164 || ||||| | |||||||| Sbjct 81734 ATGGGGAAGACAACAAATC 81752 Score = 109 bits (120), Expect = 7e-19 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | || || || || || || ||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | || || || || || || |||||||||||||| ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 33724 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | || ||||||| |||| | || || |||| ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||| | ||||||||| ||||| || || || |||||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 >seq63864 Length=1411193 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| |||||||| || ||||||||||| | |||||| || ||||| || || | || | Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 ||||| |||||||| | |||||||| || || || || |||||||| || | |||||| Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025 Query 62507 ACTATTTCTAAGACC 62521 || ||||| | ||| Sbjct 1056026 GCTGTTTCTTATACC 1056040 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCAACGA 63247 || || || |||||||| || | | ||| || ||||||||||| || |||| ||| | Sbjct 1069200 TCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||||||||| | || || |||||||| || | || |||||||| | ||| ||| | Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | ||||| || | |||| ||| || || ||||| || || || || | ||| | | Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||||| |||||| ||||||| ||| || || Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 ||||| || ||||| || || || |||||||| || || ||||| | |||||||||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||| |||||| ||| || || | ||| | |||||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 63107 TTCTATAATCGCTTTCCA 63124 ||| ||||| || | ||| Sbjct 1067976 TTCAATAATGGCGTACCA 1067993 Score = 82.4 bits (90), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 63633 AGAAAACAG--CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 |||||||| |||||||||||| ||||| |||||| ||||| || || || || || | Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63732 |||| ||||||||| |||| || || || || || |||| || Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCTGAA 1075774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629300661459360