Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04-
05] 65,662 sequences; 1,658,191,953 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq45842 145 1e-29
seq63864 104 3e-17
>seq45842
Length=221613
Score = 145 bits (160), Expect = 1e-29
Identities = 168/226 (74%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | || ||| || || || || ||||| | || | || |
Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| || || | ||||| ||||| || ||||||||||||||||| ||||| |
Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361
Query 36300 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356
| | || ||||||| |||| | || ||| |||| ||||| || |||||||| |
Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421
Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402
|||| | ||||||||| ||||||||||| ||||||||||| |||||
Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467
Score = 107 bits (118), Expect = 3e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601
|| |||||||| || ||||| ||||| ||||||||||| || | | |||| ||| |||
Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613
Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661
| | || | | | || || | ||||| | |||||| || | ||| |||||
Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673
Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721
|| | ||||| || || || ||||| || || ||||| | |||||||||||| || |||
Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733
Query 36722 ATTGGAAAAATAACAAATC 36740
|| || || | ||||||||
Sbjct 81734 ATGGGGAAGACAACAAATC 81752
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478
||||| | || |||||||| | | ||||||||||| ||||||||||| || |||||
Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000
Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522
|| || || || || |||||||| || || ||| |||||||||
Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044
>seq63864
Length=1411193
Score = 104 bits (114), Expect = 3e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
||| || ||||| || ||||||||||| | |||||| || ||||| || || | || |
Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
|||||| |||||||| | |||||||| || || || || |||||||| || | ||||||
Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025
Query 65300 ACTATTTCTAAGACC 65314
|| ||||| | |||
Sbjct 1056026 GCTGTTTCTTATACC 1056040
Score = 96.9 bits (106), Expect = 5e-15
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 65982 TCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACGA 66040
|| || || |||||||| || | | ||| |||||||||||||| || |||| ||| |
Sbjct 1069200 TCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258
Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 66099
||||||||| | || || |||||||| || | || |||||||| | ||| ||| |
Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317
Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159
| | ||| |||| |||| ||| || || ||||| || || || || | ||| | |
Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377
Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGC 66193
|||||| |||||| ||||||| ||| || ||
Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471
|||||| | || || ||||| || || ||||| || | ||||||||||| ||||
Sbjct 1063028 GATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAGA 1063087
Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCT-TATTTAGATC-TTGTGCTTCCAGGCTAT 65529
||| | ||||| || || || || || |||| | |||| ||| ||| || ||| || |
Sbjct 1063088 GCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTTGGGCCTCCTCACTCT 1063145
Query 65530 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 65589
||||||| | | | | ||| || || || || | |||||| || |||||||| ||||
Sbjct 1063146 CAAATGGGAATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATAG 1063205
Query 65590 GTCTATGTCTCTTATTAGAGATTTCAGC 65617
|||| |||| | | || || ||| |||
Sbjct 1063206 GTCTGTGTCGCATGTTGGACCTTTTAGC 1063233
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839
||||| || ||||| || || || |||||||| || |||||||| | ||||||||||||
Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915
Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899
||| |||||| ||| || || | ||| | |||||||||||||| | || ||
Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975
Query 65900 TTCTATAATCGCTTTCCA 65917
||| ||||| || | |||
Sbjct 1067976 TTCAATAATGGCGTACCA 1067993
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/102 (79%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 66426 AGAAAACAG--CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483
|||||||| |||||||||||| |||||| |||||| ||||| || || || || || |
Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732
Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 66525
|||| ||||||||| |||| || || || || || |||| ||
Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCTGAA 1075774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657632588220080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |