Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq45842 145 1e-29 seq63864 104 3e-17 >seq45842 Length=221613 Score = 145 bits (160), Expect = 1e-29 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || ||| || || || || ||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || | ||||| ||||| || ||||||||||||||||| ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 36300 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 | | || ||||||| |||| | || ||| |||| ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 |||| | ||||||||| ||||||||||| ||||||||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 || |||||||| || ||||| ||||| ||||||||||| || | | |||| ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | | || | | | || || | ||||| | |||||| || | ||| ||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || | ||||| || || || ||||| || || ||||| | |||||||||||| || ||| Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733 Query 36722 ATTGGAAAAATAACAAATC 36740 || || || | |||||||| Sbjct 81734 ATGGGGAAGACAACAAATC 81752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||| | || |||||||| | | ||||||||||| ||||||||||| || ||||| Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 || || || || || |||||||| || || ||| ||||||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 >seq63864 Length=1411193 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || ||||| || ||||||||||| | |||||| || ||||| || || | || | Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 |||||| |||||||| | |||||||| || || || || |||||||| || | |||||| Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025 Query 65300 ACTATTTCTAAGACC 65314 || ||||| | ||| Sbjct 1056026 GCTGTTTCTTATACC 1056040 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACGA 66040 || || || |||||||| || | | ||| |||||||||||||| || |||| ||| | Sbjct 1069200 TCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 66099 ||||||||| | || || |||||||| || | || |||||||| | ||| ||| | Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | | ||| |||| |||| ||| || || ||||| || || || || | ||| | | Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 |||||| |||||| ||||||| ||| || || Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 |||||| | || || ||||| || || ||||| || | ||||||||||| |||| Sbjct 1063028 GATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAGA 1063087 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCT-TATTTAGATC-TTGTGCTTCCAGGCTAT 65529 ||| | ||||| || || || || || |||| | |||| ||| ||| || ||| || | Sbjct 1063088 GCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTTGGGCCTCCTCACTCT 1063145 Query 65530 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 65589 ||||||| | | | | ||| || || || || | |||||| || |||||||| |||| Sbjct 1063146 CAAATGGGAATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATAG 1063205 Query 65590 GTCTATGTCTCTTATTAGAGATTTCAGC 65617 |||| |||| | | || || ||| ||| Sbjct 1063206 GTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 ||||| || ||||| || || || |||||||| || |||||||| | |||||||||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 ||| |||||| ||| || || | ||| | |||||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 65900 TTCTATAATCGCTTTCCA 65917 ||| ||||| || | ||| Sbjct 1067976 TTCAATAATGGCGTACCA 1067993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 66426 AGAAAACAG--CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 |||||||| |||||||||||| |||||| |||||| ||||| || || || || || | Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 66525 |||| ||||||||| |||| || || || || || |||| || Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCTGAA 1075774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657632588220080