Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13065 125 7e-24 seq63207 123 2e-23 >seq13065 Length=295510 Score = 125 bits (138), Expect = 7e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || |||| |||||||| ||||| || | || || ||||| |||||||| || || Sbjct 164319 TGTCCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCT 164260 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || || | ||||| || |||||||| ||| |||| |||||||||||||| || Sbjct 164259 GACAAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGG 164200 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||||||||| ||| || |||| | ||| | ||||| | || || Sbjct 164199 GGAATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCA 164140 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||||| || | ||||| || || | ||||| ||||| ||||||||| || Sbjct 164139 ACCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATACCT 164086 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||||| ||||| || | || || ||||| ||||| || || || | Sbjct 164088 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 164029 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || |||||||| ||| |||| |||||||||||||| || || Sbjct 164028 AAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163969 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || |||| | ||| | ||||| | || || ||| Sbjct 163968 ATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 163909 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | ||||| || || | ||||| ||||| ||||||||| || Sbjct 163908 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATACCT 163858 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||||| ||||| || | || || ||||| ||||| || || || | Sbjct 163860 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 163801 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || || ||||| ||| |||| |||||||||||||| || || Sbjct 163800 AAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163741 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| |||| | ||| | ||||| | || || ||| Sbjct 163740 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACC 163681 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||| || || || ||||| Sbjct 163680 TCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 >seq63207 Length=555540 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||||| || | |||| || ||||| || ||||||||||| || Sbjct 378662 CCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 378721 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || |||||||||||| | |||| | ||||||||| || || Sbjct 378722 AGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGA 378781 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | |||||| | || || || Sbjct 378782 ATTCCTTCTTTGTC-TTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTAC 378840 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | || || || ||||| ||||| || |||||||||||| || Sbjct 378841 CTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCATACCT 378892 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || |||||||| || || | || || ||||| || ||| Sbjct 378914 TGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCTTCAAGTTGT 378973 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| | |||| | ||||||||| ||||| || ||||||||||| ||| | || Sbjct 378974 TTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTC-TTGAATCTT 379032 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | ||| | |||||| | || || ||||||| || | || || ||||| Sbjct 379033 GGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGT 379092 Query 139741 CAACGTTTTTACGAATATTTGCATAGCT 139768 ||| ||||| || |||||||||||| || Sbjct 379093 CAAAGTTTTGACAAATATTTGCATACCT 379120 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||||||||| || | || || ||||| || ||| Sbjct 379142 TGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGT 379201 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| | |||| | ||||||||| ||||| || ||||||||||| ||| | || Sbjct 379202 TTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTC-TTGAATCTT 379260 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | ||| | || ||| | || || ||||||| || | || || ||||| Sbjct 379261 GGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGT 379320 Query 139741 CAACGTTTTTACGAATATTTGCATAGCT 139768 ||| ||||| || |||||||||||| || Sbjct 379321 CAAAGTTTTGACAAATATTTGCATACCT 379348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495656843070400