Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq45842 107 2e-18 >seq45842 Length=221613 Score = 107 bits (118), Expect = 2e-18 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 14116 AATATTCCTTCTCT-TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 ||| || | ||||| || || ||| | |||| |||||||| |||||||||||||||||| Sbjct 80921 AATTTTACCTCTCTGTTGGTTCTTTGA-TGTAGGTATCAATGAGTAAGCTATACATTTCA 80979 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 || || ||||| ||||| || ||||| ||||||||||| ||||| ||||| | ||| Sbjct 80980 GAATGAATGTTCTCCATGGCAATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGT 81039 Query 14235 ACTTCC 14240 |||||| Sbjct 81040 ACTTCC 81045 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||||||||| ||||| || || ||||| || | || ||||| | ||||| ||| Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAA--GTAAGACCAGGCATAATTCCTCTTTT 80299 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | ||| || || || ||||| || || || || ||||| || ||||| ||||| Sbjct 80300 CTTCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAA 80359 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCATTTTCTAGCCCATT 14070 |||| | || ||| || | | ||| || | ||| | |||||||| | ||||| | Sbjct 80360 AGCTACAACTCTCTCTGCATATGCTGCATTACT-TTCATTGATCCATTTAATGGCCCAAT 80418 Query 14071 CAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 | | |||| ||| | | | |||||| |||||||||||||| | ||| || Sbjct 80419 CTGCCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATAATC 80470 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/226 (70%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAAT 14314 |||| |||||||| || || |||||||||||||||||||| || ||||||| | || Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGAT--AT 81609 Query 14315 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTAC 14374 || | | ||||||||| || || |||| ||||| |||||| || || | ||| || Sbjct 81610 GAAATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAAC 81669 Query 14375 TTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14434 ||| || | ||||| || || | ||||| || ||||| ||| || || | || Sbjct 81670 TTCCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTA 81729 Query 14435 TAATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAAT 14479 || || || || ||||||| ||| ||| | ||| || ||| Sbjct 81730 CTGAATGGGGAAGACAACAAATCGTCGTGGATTATCCTTCAACAAT 81775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479334251250800