Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq45842 109 5e-19 >seq45842 Length=221613 Score = 109 bits (120), Expect = 5e-19 Identities = 93/112 (83%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 13904 AATGTTCCTTCTCT-TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 ||| || | ||||| || || ||| | |||| |||||||| |||||||||||||||||| Sbjct 80921 AATTTTACCTCTCTGTTGGTTCTTTGA-TGTAGGTATCAATGAGTAAGCTATACATTTCA 80979 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 || || ||||| || || || ||||| ||||||||||||||||| ||||||| Sbjct 80980 GAATGAATGTTCTCCATGGCAATCTGGAAACCATAAAAACATCTGGCTTCTG 81031 Score = 104 bits (114), Expect = 2e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAAT 14102 ||||||||||||| ||||| |||||||||||||||||||| || ||||||| | || Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGAT--AT 81609 Query 14103 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14162 || | | ||||||||| || || |||| ||||| ||||||| || || | ||| || Sbjct 81610 GAAATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAAC 81669 Query 14163 TTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14222 ||| || | ||||| || || | ||||| || ||||| ||| || || | || Sbjct 81670 TTCCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTA 81729 Query 14223 TAATATAGGAAAAACTACAAATC 14245 || || || || ||||||| Sbjct 81730 CTGAATGGGGAAGACAACAAATC 81752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||||||||| ||||| || || ||||| || | || ||||| | ||||| ||| Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAA--GTAAGACCAGGCATAATTCCTCTTTT 80299 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | ||| || || || || || || || || || ||||| || ||||| ||||| Sbjct 80300 CTTCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAA 80359 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTT--TTTGTTTGATATCCATTTTCTAGCCCAT 13857 |||| | || ||| || | | ||| || ||| ||| |||||||| | ||||| Sbjct 80360 AGCTACAACTCTCTCTGCATATGCTGCATTACTTTCATTG--ATCCATTTAATGGCCCAA 80417 Query 13858 TCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || | |||| ||| | | | |||||| || || ||||| || Sbjct 80418 TCTGCCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAA 80461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| || |||||||| | |||||| || ||||||||||| || || ||| Sbjct 76800 GACATTACACCCATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCCT 76859 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | |||||| | |||||| || || || |||||| Sbjct 76860 TCTAATGATATCTGTTCCATGAAGTCAAAAGGATTT 76895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478195986277680