Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq45842 136 5e-27 seq63864 105 9e-18 >seq45842 Length=221613 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | || ||| || || || || ||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || |||| ||||| ||||| || || |||||||||||||| ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 42207 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | || ||||||| |||| | || ||| |||| ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||| | ||||||||| ||||| || || || |||||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 || ||||| || || ||||| ||||| ||||||||||| || | | |||| ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | | || || | | | || | ||||| | |||||| || | ||| ||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 ||| | ||||| || || |||||||| || || ||||| | |||||| ||||| || ||| Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733 Query 42629 ATTGGGAAAATAACAAATC 42647 || ||||| | |||||||| Sbjct 81734 ATGGGGAAGACAACAAATC 81752 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| | || ||||| || | | ||||||||||| ||||||||||| || ||||| Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||| || || || ||||||||||| || ||| |||||||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| || ||||| || || ||||| || || | || || ||||| || ||||||||| Sbjct 76800 GACATTACACCCATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCCT 76859 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAT 41868 || |||||||| | ||||||||| ||||| ||||| ||||| ||||| Sbjct 76860 TCTAATGATATCTGTTCCATGAAGTCAAAAGGATTTTCTACATTGTAAAT 76909 >seq63864 Length=1411193 Score = 105 bits (116), Expect = 9e-18 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGA 72002 || || || |||||||| ||| | | | | |||||||||||||| || |||| ||| | Sbjct 1069200 TCAAATTCCTCTCCCCA-GCAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||||||||||| | ||| |||||||| || | || |||||||| | ||| ||| | Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | ||||| |||| |||| || || || ||||| || || || || | ||| | | Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 ||||||| |||||| ||||||| ||| || || Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || ||||| || ||||||||||| | |||||| || ||||| || || | || | Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||||| |||||||| | |||||||| || || || || |||||||| || | ||||| Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025 Query 71262 ACTATTTCTAAGACCATG 71279 || ||||| | |||||| Sbjct 1056026 GCTGTTTCTTATACCATG 1056043 Score = 93.3 bits (102), Expect = 6e-14 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||||||| | || || ||||| || || ||| || || | ||||||||||| |||| Sbjct 1063027 TGATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAG 1063086 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCT-TATTGAGATC-TTGTGCTTCCGGGCTA 71490 || ||||||| || || || || || |||| | || | ||| ||| || ||| || Sbjct 1063087 AGCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTTGGGCCTCCTCACTC 1063144 Query 71491 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATA 71550 |||||||| | | | | ||| || || || || | |||||| || |||||||| ||| Sbjct 1063145 TCAAATGGGAATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATA 1063204 Query 71551 GGTCTGTGTCTCTTATTAGAAATTTCAGC 71579 |||||||||| | | || || ||| ||| Sbjct 1063205 GGTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 72388 AGAAAACAG--CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 |||||||| |||||||||||| |||||| |||||| ||||| || || || || || | Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 72487 |||| ||||||||| |||| ||||| || || || |||| || Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCTGAA 1075774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 ||||| || ||| || || || || |||||||| || |||||||| | |||||||||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 ||| |||||| ||| || || | || | |||||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 71862 TTCTATAATCGCTTTCCA 71879 ||| ||||| || | ||| Sbjct 1067976 TTCAATAATGGCGTACCA 1067993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670588345723120