Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq45842 114 1e-20 >seq45842 Length=221613 Score = 114 bits (126), Expect = 1e-20 Identities = 168/232 (72%), Gaps = 12/232 (5%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||||||| || ||||| || ||||| || ||||| ||||||| |||| ||| | Sbjct 80244 TCATCTCTACTGATAAGCTCATTGCTGAAA--GTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| || ||||| ||||| ||| || ||||| |||||||| ||||||||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 13293 CTATCAAC-CTTTCACCATA---CGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAG 13348 ||| |||| || || |||| | | || ||| | | ||||| || ||||||| Sbjct 80362 CTA-CAACTCTCTCTGCATATGCTGCATTACTTTCA---TTGATCCATTTAATGGCCCAA 80417 Query 13349 TTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAT 13400 | ||| |||| ||| || || ||| | || || || ||||| | ||||| Sbjct 80418 TCTGCCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATAAT 80469 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 12844 TGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCC 12903 |||||| ||| ||| || |||||||| | |||||| || |||||||||||||| ||||| Sbjct 76799 TGACATTACACCCATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCC 76858 Query 12904 TTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||||| || || | |||||| || || |||||||||| Sbjct 76859 TTCTAATGATATCTGTTCCATGAAGTCAAAAGGATTTT 76896 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || ||||| || | ||||||||||||||| |||||||| || ||||| || || ||| Sbjct 80947 ATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCAATCTGG 81006 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||||||||||||||| || |||| |||| ||||| Sbjct 81007 AAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG--TATGTGCTTAATAA 13595 |||||||| || || || || |||||||| |||||||| ||||| |||||| | || | Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGAT--ATGA 81611 Query 13596 AttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | | || | ||| || ||| ||||| ||||||||||| ||||| || | Sbjct 81612 AATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTT 81671 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAA 13715 |||| | ||||| || || || | || ||||| |||||| ||| || || | || Sbjct 81672 CCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACT 81731 Query 13716 CAATGGGAAACACAACGTATCTTC 13739 |||||| || ||||| ||| || Sbjct 81732 GAATGGGGAAGACAACAAATCGTC 81755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430637503910124