Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq63207 201 3e-46 seq13065 179 9e-40 seq55160 96.9 8e-15 seq57759 89.7 1e-12 seq45842 89.7 1e-12 seq41121 87.8 4e-12 >seq63207 Length=555540 Score = 201 bits (222), Expect = 3e-46 Identities = 188/238 (79%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || ||||| || | ||||| ||||| | ||| || || |||||||| || Sbjct 379336 TATTTGCATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTT 379395 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||||| || || ||||| || ||||| |||||||| ||||| ||||| | || || || Sbjct 379396 GTAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTG 379455 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| ||||||||||| || |||||||| ||||| |||||||| | |||||| Sbjct 379456 ATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGA 379515 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| ||||| | || || || ||||||||||| || |||||||| ||||||||| Sbjct 379516 AGGTTCCACCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||||| ||||| | ||| || || || ||||| || ||||| || Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAG 322060 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||||||| ||||| |||||||| ||||| ||||| | || || ||||| || || Sbjct 322061 AGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGA 322120 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| || |||||||| ||||| |||||||| | |||||| |||||| ||| Sbjct 322121 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACC 322180 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||||||||| || |||||||| |||||||| Sbjct 322181 TCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 190 bits (210), Expect = 5e-43 Identities = 185/237 (78%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || ||||| || | ||||| ||||| | ||| || || |||||||| || Sbjct 378880 TATTTGCATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTT 378939 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||||| || ||||| || ||||| |||||||| ||||| ||||| | || || || Sbjct 378940 GTAGTCAGAGAGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTG 378999 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| ||||||||||| || |||||||| ||||| || ||||| | || || Sbjct 379000 ATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGA 379059 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| ||||| ||||| ||||| || | ||||| |||||||| ||||| Sbjct 379060 TGGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 187 bits (206), Expect = 6e-42 Identities = 184/237 (78%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || ||||| || | ||||| ||||| | ||| || || |||||||| || Sbjct 379108 TATTTGCATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTT 379167 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||| || || ||||| || ||||| |||||||| ||||| ||||| | || || || Sbjct 379168 ATAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTG 379227 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| ||||||||||| || |||||||| ||||| || ||||| | | || Sbjct 379228 ATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGA 379287 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| ||||| ||||| ||||| || | ||||| |||||||| ||||| Sbjct 379288 TGGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | ||| || || |||||||| |||||||| || || || || || ||| Sbjct 378677 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATCT 378736 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||||||||| | || || ||||| || || ||||||||||| || Sbjct 378737 TCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 378796 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| || ||||| | || || ||||||||||| ||||| ||||| Sbjct 378797 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTT 378856 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | ||||| |||||||| ||||| Sbjct 378857 TTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | ||| || || |||||||| |||||||| || || |||||||| ||| Sbjct 321773 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTACCATCT 321832 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||| ||||| | || || ||||| || || |||||||||||||| Sbjct 321833 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGGATTCCTTCTTTATCT 321892 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||| ||| | ||| |||||||| | | || ||||||||||| ||||| ||||| Sbjct 321893 TGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCTACCTCAAGTGTGATAGTT 321952 Query 104528 TTACCAGT 104535 ||||| || Sbjct 321953 TTACCGGT 321960 Score = 136 bits (150), Expect = 9e-27 Identities = 160/213 (75%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| | | | || || |||||||| |||||||| || || ||| | | | Sbjct 321548 AGTACAAGATGAAGTATCGACTCCTTCTGAATGTTATAGTCCGAGAGGATTCCA---TAT 321604 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 | ||||| || ||||| |||| | || || ||||| | || ||||||||||| || Sbjct 321605 TGAAGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTGTCT 321664 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| |||||||| | || || ||| ||||||||| | ||||| ||||| Sbjct 321665 TGAATCTTGGCTTTGACATTTTCAATTGTGTCTGCT-GGTTCTACCGCAAGTGTGATAGT 321723 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | ||||| | |||||| ||||| Sbjct 321724 TTTACCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 179 bits (198), Expect = 9e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || ||||||||||||||||| ||||| || | ||| | ||| ||||| Sbjct 164070 ACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATCTTCA 164011 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| || ||||| || || | || ||||| || || |||||||| || ||||| Sbjct 164010 AGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGG 163951 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||| | ||| || ||||| ||||| |||||||| ||||| Sbjct 163950 ATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTT 163891 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||||| || || || ||||| Sbjct 163890 CCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || |||||||||||||| || ||||| || | ||| | || ||||| Sbjct 164298 ACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCA 164239 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| || ||||| || || | || ||||| || || ||||||||||| ||||| Sbjct 164238 AGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 164179 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||| | ||| || ||||| ||||| |||||||| ||||| Sbjct 164178 ATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTT 164119 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||||| || || || ||||| Sbjct 164118 CCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || ||||||||||||||||| ||||| || | ||| | || ||||| Sbjct 163842 ACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCA 163783 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || ||||| || || | || ||||| || || ||||||||||| || || Sbjct 163782 AGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCTTGG 163723 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || ||||||||||| | ||| || |||||| ||||| | || || ||||| Sbjct 163722 ATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATGGTCTTT 163663 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| |||||||| Sbjct 163662 CCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 >seq55160 Length=560674 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 |||||||||||||| |||| |||| || | | ||||| |||| || | || ||||| Sbjct 298982 AGCATTATGGTGGTTTTATTTCTCCAAGGTAGTAGAAATGATAGACACATTATTTTTCAT 299041 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 |||| || || || ||| | |||||||| ||||| || |||||| | ||||| Sbjct 299042 TGTACGTAAAAAGAACAACCAAGTGAGTTTTCTTCATGTGTACCATCATGCATCAATGTT 299101 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 | || | | ||||| ||| |||||||| |||| || |||||| Sbjct 299102 TCCTCTATGGTGGATTGGTGTTAAATGGGTCGCCGGTGGACAA 299144 >seq57759 Length=555176 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||||||||| |||||||| | |||||| || ||||||| ||||| |||||||| || Sbjct 199759 TTCTGAATATTGTAGTCAGACAAAGTTCTGCCATCTTCTAACTGTTTACCAGCAAAGATC 199818 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 | ||||| ||||| ||||| |||||| Sbjct 199819 AATCTCTGCTGATCTGGAGGAATTCCT 199845 >seq45842 Length=221613 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC---GCGCCTTAC 269125 ||||| | | |||| | || ||||| | |||||||| || || || || | || Sbjct 80437 TGTGTAAAAGAAAAGGCAGATTGGGCCATTAAATGGATCAATGAAAGTAATGCAGCATAT 80378 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 | ||| || | || |||||||| || |||||||| || || || || || |||||| Sbjct 80377 GCAGAGAGAGTTGTAGCTTTTGCAGCAGTAGAAGGAATTTTTTTCTCTGGTAGTTTTGCA 80318 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 ||||| || ||| ||||||||||||| ||||||| || | |||||| Sbjct 80317 GCTATTTTCTGGCTGAAGAAAAGAGGAATTATGCCTGGTCTTACTTTC 80270 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 268893 AAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACG 268952 ||| || || ||||| ||| | | || |||||| | | ||||||||||||||||| | Sbjct 81070 AAATTCAGGTTGAGAACTTCAGCAAGGAAGTACAGGCTACAGAAGCCAGATGTTTTTATG 81011 Query 268953 GATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTT 269012 | |||||||| || || || || |||||||| || ||||| || || | || ||||| | Sbjct 81010 GTTTCCAGATTGCCATGGAGAACATTCATTCTGAAATGTATAGCTTACTCATTGATACCT 80951 Query 269013 ATAT 269016 | || Sbjct 80950 ACAT 80947 >seq41121 Length=688836 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 165134 GATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTA 165193 |||||| |||||||||| ||||||||||||||||| ||| ||||| | |||||||| || Sbjct 581278 GATCCTATTTTACATATTGAGCTAAGAAGATGGGCTGATCTGATGGTAATAGCACCACTA 581337 Query 165194 ACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTA 165244 || |||| | || ||| | || || || |||||| ||||| | ||| Sbjct 581338 GATGCTAACACGCTGGCAAAGCTTGCCAATGGAATCTGTGATAACCTTTTA 581388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150429735002696