Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq55810 96.9 2e-15 seq3519 96.9 2e-15 seq35521 93.3 2e-14 seq48472 86.0 3e-12 >seq55810 Length=684 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/97 (82%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| ||| |||||||||| |||| |||||||| Sbjct 360 AATTAATACAACAAAAATGAA--TGGCCAATGTGGGGATCGAACCCACGACATTCGCGTT 417 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 418 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 454 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 4 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 63 Query 11528 CC 11529 || Sbjct 64 CC 65 >seq3519 Length=296235 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/97 (82%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| ||| |||||||||| |||| |||||||| Sbjct 923 AATTAATACAACAAAAATGAA--TGGCCAATGTGGGGATCGAACCCACGACATTCGCGTT 866 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 865 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 829 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| || |||||||||| |||| |||||||| Sbjct 23648 AATTAATACGACAAAAATGAA--TGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 23591 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 23590 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 23554 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| || |||||||||| |||| |||||||| Sbjct 25932 AATTAATACGACAAAAATTAA--TGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 25875 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 25874 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 25838 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| | |||||| || |||||||||| |||| |||||||| Sbjct 26319 AATTAATACGACAAAAATTA--TTGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 26262 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 26261 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 26225 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| || |||||||||| |||| |||||||| Sbjct 26707 AATTAATACGACAAAAATGAA--TGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 26650 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 26649 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 26613 Score = 84.2 bits (92), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| || |||||||||| |||| |||||||| Sbjct 27480 AATTAATACGACAAAAATGAA--TGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 27423 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||| ||||| ||| |||| Sbjct 27422 ATTAGCACGACGCTCTAACCAGCTGAGATAACCGGCC 27386 >seq35521 Length=526 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| || ||||| || |||||||||| |||| |||||||| Sbjct 83 AATTAATACAACAAAAATGAA--TGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 140 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 141 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 177 >seq48472 Length=623071 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 11437 AATTAATA----AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||||| |||||| | |||||| || |||||||||| |||| |||||||| Sbjct 621710 AATTAATACGACAAAAATTA--TTGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 621653 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 |||||||||||| ||| |||||||||||||| Sbjct 621652 ATTAGCACGACGATCTAACCAACTGAGCTAA 621622 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261281940196312