Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13065 131 2e-25 seq63207 120 3e-22 >seq13065 Length=295510 Score = 131 bits (144), Expect = 2e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGC 94807 |||| | ||| | |||| | ||||||| |||||||||||| ||||| || || || Sbjct 164349 TTTAATGTTAAAGATTTTGTTCAATTTTATTGTCCTCCTCTCAAACGCAAGACTAAATGG 164290 Query 94808 AAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTT 94867 | || ||||| || || | ||| || || || ||| | ||| || || ||||| Sbjct 164289 AGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGTTTA 164230 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | | |||||||||||| ||||| ||||||||||| | || || ||| Sbjct 164229 CCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTAGCC 164170 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | ||||| | | || || |||| || || || ||||||||||| Sbjct 164169 TTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTAAGT 164110 Query 94988 GTTTTCACAAAGATCTGCAT 95007 |||||||| || || ||||| Sbjct 164109 GTTTTCACGAAAATTTGCAT 164090 Score = 129 bits (142), Expect = 5e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||| ||||| || || || | || ||||| || || | Sbjct 163872 AAAATTTGCATACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATA 163813 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| | ||| || || || || ||| ||||||| | | |||| Sbjct 163812 TTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGC 163753 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||||||||| | ||||| ||||| || | | ||||| Sbjct 163752 TGATCTGGGGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCT 163693 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||| ||||| || || |||||||||||||||||||| Sbjct 163692 GAAGGTTCAACCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||| ||||| || || || | || ||||| || || | Sbjct 164100 AAAATTTGCATACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATA 164041 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| ||| || || ||||| ||| ||||||| | | |||| Sbjct 164040 TTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGC 163981 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||| ||||| | || || ||||| || | | ||||| Sbjct 163980 TGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCT 163921 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || || ||||||||||| |||||||| || || ||||| Sbjct 163920 GATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 >seq63207 Length=555540 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| || | || || ||||||||||||||||||||||| |||||||| Sbjct 379417 ATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTT 379476 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || ||||| ||| || |||| | || || || | ||||| Sbjct 379477 GTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGAT 379536 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| |||||||| || || |||||||||||||| Sbjct 379537 GGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 379572 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| || | || || ||||||||||||||||| ||||| |||||||| Sbjct 322072 ATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTT 322131 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || ||||| ||| || |||| | || || || | ||||| Sbjct 322132 GTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGAT 322191 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| |||||||| || || |||||||||||||| Sbjct 322192 GGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| || |||| || ||||||||||||||||| ||||| |||||||| Sbjct 378733 ATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTT 378792 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || |||||| | | ||||| | | || || |||| ||||| Sbjct 378793 GTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGAT 378852 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || | |||||| ||||| || ||||| Sbjct 378853 AGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| || | || || ||||||||||||||||||||||| |||||||| Sbjct 378961 ATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTT 379020 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || |||||| | | ||||| | | || || |||| ||||| Sbjct 379021 GTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGAT 379080 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || | |||||| ||||| || ||||| Sbjct 379081 AGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 105 bits (116), Expect = 6e-18 Identities = 183/263 (70%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| || | | ||||| |||| ||| || |||||||| | || | || | || Sbjct 379084 TTTACCGGTCAAAGTTTTGACAAATATTTGCATACCTCCTCTAAGACGGAGTACAAGATG 379143 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || || ||||| || | |||||| || | | || ||| ||| || || ||| Sbjct 379144 AAGTGTTGACTCCTTCTGAATGTTATAGTC--TGAGAGGGTTCTTCCATCTTCAAGTTGT 379201 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || | || || ||||||||||||||||||||||| ||||||||||| | ||| || Sbjct 379202 TTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTG 379261 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 || |||||| | | | ||| | | || || |||| ||||| ||||| || || Sbjct 379262 GCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGTC 379321 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | |||||| ||||| || ||||| Sbjct 379322 AAAGTTTTGACAAATATTTGCAT 379344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447923253790320