Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19131 141 1e-29 seq58209 136 6e-28 seq64748 80.6 4e-11 seq171 80.6 4e-11 >seq19131 Length=3308 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| |||||||| || || || ||||| ||||||||||| || | | ||||| Sbjct 1869 CGTGATAATATCCAAGGTATTACTAAACCAGCCATCCGTCGTCTTGCCAGGAGAGGTGGT 1928 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | |||||| | |||| || || | |||| ||| |||| | || | Sbjct 1929 GTCAAACGTATTTCTGGACTTATCTACGAGGAAACCCGTGGTGTACTGAAAGTATTTTTG 1988 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| |||||| || || || |||||||| || | ||||| ||||| Sbjct 1989 GAAAATGTCATCCGTGATGCAGTCACATACACAGAGCACGCCAAGAGGAAGACAGTCACA 2048 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| |||||||||| ||||||||||||||| | | | || || || ||| || Sbjct 2049 GCCATGGATGTCGTCTATGCTTTGAAACGTCAAGGCAGAACCTTGTACGGATTCGGAGGT 2108 Query 16697 TAA 16699 ||| Sbjct 2109 TAA 2111 >seq58209 Length=9569 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| |||||||| || || || ||||| ||||||||||| || | | ||||| Sbjct 9123 CGTGATAATATCCAAGGTATTACTAAACCAGCCATCCGTCGTCTTGCCAGGAGAGGTGGT 9182 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| |||| ||| | |||| || || | |||| ||| |||| | || | Sbjct 9183 GTCAAACGTATCTCCGGACTTATCTACGAGGAAACCCGTGGTGTACTGAAAGTATTTTTG 9242 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| |||||| || || || ||||| || || | ||||| ||||| Sbjct 9243 GAAAATGTCATCCGTGATGCAGTCACATACACAGAGCATGCCAAGAGGAAGACAGTCACA 9302 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| |||| ||||| ||||||||||||||| | | | || || |||||| || Sbjct 9303 GCCATGGATGTCGTGTATGCTTTGAAACGTCAAGGCAGAACCTTGTACGGATTTGGAGGT 9362 Query 16697 TAA 16699 ||| Sbjct 9363 TAA 9365 >seq64748 Length=2119 Score = 80.6 bits (88), Expect = 4e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || |||| |||||| || || || ||||| || || | ||||| ||||| |||||| Sbjct 148 GTCATCCGTGATGCAGTCACATACACAGAGCATGCCAAGAGGAAGACAGTCACATCCATG 89 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| ||||||| || ||||||||||||||| | | | || || || ||| ||||| Sbjct 88 GATGTCGTCTACGCTTTGAAACGTCAAGGCAGAACCTTGTACGGATTCGGAGGTTAA 32 >seq171 Length=52089 Score = 80.6 bits (88), Expect = 4e-11 Identities = 90/118 (76%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || |||| |||||| || || || ||||| || || | ||||| ||||| ||||| Sbjct 13684 GTCATCCGTGATGCAGTCACATACACAGAGCATGCCAAGAGGAAGACAGTCACAACCATG 13625 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT-TATGGTTTTGGAAGTTAA 16699 ||| ||||||| || ||||||||||||||| | || ||| || || || ||| ||||| Sbjct 13624 GATGTCGTCTACGCTTTGAAACGTCAAGGCAG-AATATTGTACGGATTCGGAGGTTAA 13568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79015164773766