Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq55340 93.3 8e-15 seq43152 89.7 1e-13 seq20570 89.7 1e-13 seq18306 89.7 1e-13 seq60772 82.4 1e-11 seq57162 82.4 1e-11 seq5554 80.6 5e-11 >seq55340 Length=90601 Score = 93.3 bits (102), Expect = 8e-15 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4841 TCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATG 4900 |||||| || |||||||||||||||| |||||||||| | ||||| | ||| || | Sbjct 66625 TCAACAGACCTATCTATGTAGGGTTTACTATATTAGATGTGTCTAAGACACTTATGTACG 66566 Query 4901 ACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTG 4960 ||||||| ||||| ||| ||| | | | |||| | || | || || | ||| ||| | Sbjct 66565 ACTTTCACTACAACTATATTAAGAAGAGGTATGGATCTAACGCACAACTGCTGTTCACCG 66506 Query 4961 ACACAGATAGTCTA 4974 |||| ||||||||| Sbjct 66505 ACACTGATAGTCTA 66492 >seq43152 Length=322603 Score = 89.7 bits (98), Expect = 1e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4841 TCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATG 4900 |||||| || |||||||||||||||| |||||||||| | ||||| | ||| || | Sbjct 29280 TCAACAGACCTATCTATGTAGGGTTTACTATATTAGATGTGTCTAAGACACTTATGTACG 29221 Query 4901 ACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTG 4960 ||||||| ||||| ||| ||| | | | |||| | || | || || | ||| || | Sbjct 29220 ACTTTCACTACAACTATATTAAGAAGAGGTATGGATCTAACGCACAACTGCTGTTTACCG 29161 Query 4961 ACACAGATAGTCTA 4974 |||| ||||||||| Sbjct 29160 ACACTGATAGTCTA 29147 >seq20570 Length=231214 Score = 89.7 bits (98), Expect = 1e-13 Identities = 225/339 (66%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 3843 CATTTCCGATGACGATTATGCTTTTGCTCAAGTAGTCTGGAACGAGTTTAAAATCAATAC 3902 ||| || ||||||||||| | | |||||| || ||||| ||||| || || | || Sbjct 206643 CATCTCTGATGACGATTACGAATACGCTCAAAAGGTTTGGAAAGAGTTCAATATACAAAC 206702 Query 3903 GCTTGGAGAGTACTCGGACTTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTT 3962 | || || || ||| | ||| |||| || | || || || ||||| || | || Sbjct 206703 AATGGGTGAATATCACGACCTTTACCTAAAAACAGTCGTTCTGCTGTTGACGGACATTTT 206762 Query 3963 TGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACACTTTTATAC 4022 |||||||||| || | |||| | || ||||| ||||| | |||||| ||||| Sbjct 206763 TGAAAACTTTCGAAAGACTTGTCTGCAGTATTACAAATTAGATCCTGCACACTTCTATAC 206822 Query 4023 AGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTT 4082 | |||||||||| | || |||| |||| | |||||||| |||||| Sbjct 206823 AATACCAGGTCTTGCTAA-----GAATG----AGCA-----ATGTAGAACTGGAACTGAC 206868 Query 4083 AACTGATCCTGAGATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGTATCGATG-T 4141 || ||||| || ||| ||| || | ||||| |||||||||| | | ||| | Sbjct 206869 GACAGATCCCGATATGTATCTCTTTTTCGAAAATTCCATTCGCGGTGGTCTCTTCATGAT 206928 Query 4142 GTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGG 4180 || || | ||||| |||| |||||| |||| ||| Sbjct 206929 AAGC-AACAAGTATGCTAAAGCAAACAACTCGTATCTGG 206966 >seq18306 Length=1929 Score = 89.7 bits (98), Expect = 1e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4841 TCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATG 4900 |||||| || |||||||||||||||| |||||||||| | ||||| | ||| || | Sbjct 419 TCAACAGACCTATCTATGTAGGGTTTACTATATTAGATGTGTCTAAGACACTTATGTACG 360 Query 4901 ACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTG 4960 ||||||| ||||| ||| ||| | | | |||| | || | || || | ||| || | Sbjct 359 ACTTTCACTACAACTATATTAAGAAGAGGTATGGATCTAACGCACAACTGCTGTTTACCG 300 Query 4961 ACACAGATAGTCTA 4974 |||| ||||||||| Sbjct 299 ACACTGATAGTCTA 286 >seq60772 Length=1211017 Score = 82.4 bits (90), Expect = 1e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4612 CGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTT 4671 ||| ||| ||| |||||||| ||||| ||||| || | |||||| ||||| || |||| Sbjct 929883 CGACAACAAGCCAAGAATGATTTCGAGAAAAAATTCTTTAAATTGATGAACAACTCGGTG 929942 Query 4672 TTTGGAAAGACGATGGAGAA 4691 ||||| |||||||||||||| Sbjct 929943 TTTGGTAAGACGATGGAGAA 929962 >seq57162 Length=742 Score = 82.4 bits (90), Expect = 1e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4612 CGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTT 4671 ||| ||| ||| |||||||| ||||| ||||| || | |||||| ||||| || |||| Sbjct 545 CGACAACAAGCCAAGAATGATTTCGAGAAAAAATTCTTTAAATTGATGAACAACTCGGTG 604 Query 4672 TTTGGAAAGACGATGGAGAA 4691 ||||| |||||||||||||| Sbjct 605 TTTGGTAAGACGATGGAGAA 624 >seq5554 Length=447179 Score = 80.6 bits (88), Expect = 5e-11 Identities = 239/366 (65%), Gaps = 17/366 (5%) Strand=Plus/Minus Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672 |||| | || || || |||||||| ||| | |||| |||| | ||||| || || || | Sbjct 5024 GAAAGATGGCAAACAACGAGTTCGAGAAAGATTTTTTTAAACTGATGAACAACGCCGTGT 4965 Query 4673 TTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAAGAACAAAGTGGC 4732 ||||||| ||||||||||| |||| | ||| |||| | || ||| Sbjct 4964 TTGGAAAAACGATGGAGAACCTACGTAGG-----AGACTTATAGTCCAGT------TGGT 4916 Query 4733 AAAGT--CAATACAATGTATCGGATTTAGTATGTAGACCAAACTTCCACAGCCTTACAAT 4790 ||| |||| || | | | | | | ||| | ||||||| | ||| ||| Sbjct 4915 AAACAACCAATCAAAAGCCAGGAAGCTCACCAGCAAACCCACCTTCCACGCCTTTAGAAT 4856 Query 4791 TTTTGATGAGGATATGGTTATAGTTGAACT--TAAAAAAGCTAGAGTTTGCTTCAACAAG 4848 ||| | |||||| | || ||| | | | ||| | | | | | | |||||| Sbjct 4855 ATTTAACGAGGATCTAGTGGCCGTTCACATGTTGAAACAAC--GTCTCTACCTCAACAGA 4798 Query 4849 CCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCAT 4908 | ||||||||||| |||| |||||||||| | ||||| | ||| || |||||||| Sbjct 4797 TCTATCTATGTAGGCTTTACTATATTAGATGTGTCTAAGACACTTATGTACGACTTTCAC 4738 Query 4909 TACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGAT 4968 ||||| ||| ||| | | | |||| | || | || || | ||| || ||||| ||| Sbjct 4737 TACAACTATATTAAGAAGAGGTATGGATCTAGCGCACAACTGCTGTTTACCGACACTGAT 4678 Query 4969 AGTCTA 4974 |||||| Sbjct 4677 AGTCTA 4672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97898005808748